added scrollable tab areas for the updated basic statistics output

2 files changed, 38 insertions, 38 deletions

diff --git a/web/webqtl/basicStatistics/updatedBasicStatisticsPage.py b/web/webqtl/basicStatistics/updatedBasicStatisticsPage.py
index 156dafe7..ab7ed07d 100755
--- a/web/webqtl/basicStatistics/updatedBasicStatisticsPage.py
+++ b/web/webqtl/basicStatistics/updatedBasicStatisticsPage.py
@@ -63,9 +63,9 @@ class updatedBasicStatisticsPage(templatePage):
 					thisValFull = [strain_names[i], this_strain_val, this_strain_var]	
 					vals.append(thisValFull)
 	
-				stats_tab_list = [HT.Href(text="Basic Table", url="#statstabs-1", Class="stats_tab"),HT.Href(text="Probability Plot", url="#statstabs-5", Class="stats_tab"), 
+				stats_tab_list = [HT.Href(text="Basic Table", url="#statstabs-1", Class="stats_tab"),HT.Href(text="Probability Plot", url="#statstabs-2", Class="stats_tab"), 
 								HT.Href(text="Bar Graph (by name)", url="#statstabs-3", Class="stats_tab"), HT.Href(text="Bar Graph (by rank)", url="#statstabs-4", Class="stats_tab"), 
-								HT.Href(text="Box Plot", url="#statstabs-2", Class="stats_tab")]
+								HT.Href(text="Box Plot", url="#statstabs-5", Class="stats_tab")]
 				stats_tabs = HT.List(stats_tab_list)
 				
 				stats_container = HT.Div(id="stats_tabs", Class="ui-tabs")
@@ -73,7 +73,7 @@ class updatedBasicStatisticsPage(templatePage):
 				
 				stats_script_text = """$(function() { $("#stats_tabs").tabs();});""" #Javascript enabling tabs
 				
-				table_div = HT.Div(id="statstabs-1")
+				table_div = HT.Div(id="statstabs-1", style="height:320px;width:740px;overflow:scroll;")
 				table_container = HT.Paragraph()	
 			
 				statsTable = HT.TableLite(cellspacing=0, cellpadding=0, width="100%")
@@ -86,16 +86,21 @@ class updatedBasicStatisticsPage(templatePage):
 				table_div.append(table_container)
 				stats_container.append(table_div)
 	
-				boxplot_div = HT.Div(id="statstabs-2")
-				boxplot_container = HT.Paragraph()
-				boxplot = HT.TableLite(cellspacing=0, cellpadding=0, width="100%")
-				boxplot_img, boxplot_link = BasicStatisticsFunctions.plotBoxPlot(vals)
-				boxplot.append(HT.TR(HT.TD(boxplot_img, HT.P(), boxplot_link, align="left")))		
-				boxplot_container.append(boxplot)
-				boxplot_div.append(boxplot_container)
-				stats_container.append(boxplot_div)	
+				normalplot_div = HT.Div(id="statstabs-2", style="height:540px;width:740px;overflow:scroll;")
+				normalplot_container = HT.Paragraph()
+				normalplot = HT.TableLite(cellspacing=0, cellpadding=0, width="100%")
+				plotTitle = fd.formdata.getvalue("normalPlotTitle","")
+				normalplot_img = BasicStatisticsFunctions.plotNormalProbability(vals=vals, RISet=fd.RISet, title=plotTitle, specialStrains=specialStrains)
+				normalplot.append(HT.TR(HT.TD(normalplot_img)))
+				normalplot.append(HT.TR(HT.TD(HT.BR(),HT.BR(),"This plot evaluates whether data are \
+				normally distributed. Different symbols represent different groups.",HT.BR(),HT.BR(),
+				"More about ", HT.Href(url="http://en.wikipedia.org/wiki/Normal_probability_plot", 
+						target="_blank", text="Normal Probability Plots"), " and more about interpreting these plots from the ", HT.Href(url="/glossary.html#normal_probability", target="_blank", text="glossary"))))				
+				normalplot_container.append(normalplot)
+				normalplot_div.append(normalplot_container)
+				stats_container.append(normalplot_div)
 	
-				barName_div = HT.Div(id="statstabs-3")
+				barName_div = HT.Div(id="statstabs-3", style="height:540px;width:740px;overflow:scroll;")
 				barName_container = HT.Paragraph()
 				barName = HT.TableLite(cellspacing=0, cellpadding=0, width="100%")
 				barName_img = BasicStatisticsFunctions.plotBarGraph(identification=fd.identification, RISet=fd.RISet, vals=vals, type="name")
@@ -104,7 +109,7 @@ class updatedBasicStatisticsPage(templatePage):
 				barName_div.append(barName_container)
 				stats_container.append(barName_div)
 	
-				barRank_div = HT.Div(id="statstabs-4")
+				barRank_div = HT.Div(id="statstabs-4", style="height:540px;width:740px;overflow:scroll;")
 				barRank_container = HT.Paragraph()
 				barRank = HT.TableLite(cellspacing=0, cellpadding=0, width="100%")
 				barRank_img = BasicStatisticsFunctions.plotBarGraph(identification=fd.identification, RISet=fd.RISet, vals=vals, type="rank")
@@ -112,20 +117,15 @@ class updatedBasicStatisticsPage(templatePage):
 				barRank_container.append(barRank)
 				barRank_div.append(barRank_container)
 				stats_container.append(barRank_div)		
-	
-				normalplot_div = HT.Div(id="statstabs-5")
-				normalplot_container = HT.Paragraph()
-				normalplot = HT.TableLite(cellspacing=0, cellpadding=0, width="100%")
-				plotTitle = fd.formdata.getvalue("normalPlotTitle","")
-				normalplot_img = BasicStatisticsFunctions.plotNormalProbability(vals=vals, RISet=fd.RISet, title=plotTitle, specialStrains=specialStrains)
-				normalplot.append(HT.TR(HT.TD(normalplot_img)))
-				normalplot.append(HT.TR(HT.TD(HT.BR(),HT.BR(),"This plot evaluates whether data are \
-				normally distributed. Different symbols represent different groups.",HT.BR(),HT.BR(),
-				"More about ", HT.Href(url="http://en.wikipedia.org/wiki/Normal_probability_plot", 
-						target="_blank", text="Normal Probability Plots"), " and more about interpreting these plots from the ", HT.Href(url="/glossary.html#normal_probability", target="_blank", text="glossary"))))				
-				normalplot_container.append(normalplot)
-				normalplot_div.append(normalplot_container)
-				stats_container.append(normalplot_div)
+
+				boxplot_div = HT.Div(id="statstabs-5", style="height:540px;width:740px;overflow:scroll;")
+				boxplot_container = HT.Paragraph()
+				boxplot = HT.TableLite(cellspacing=0, cellpadding=0, width="100%")
+				boxplot_img, boxplot_link = BasicStatisticsFunctions.plotBoxPlot(vals)
+				boxplot.append(HT.TR(HT.TD(boxplot_img, HT.P(), boxplot_link, align="left")))		
+				boxplot_container.append(boxplot)
+				boxplot_div.append(boxplot_container)
+				stats_container.append(boxplot_div)					
 	
 				stats_cell.append(stats_container)	
 				stats_script.append(stats_script_text)
diff --git a/web/webqtl/showTrait/DataEditingPage.py b/web/webqtl/showTrait/DataEditingPage.py
index 974b2ed5..c240d8a0 100755
--- a/web/webqtl/showTrait/DataEditingPage.py
+++ b/web/webqtl/showTrait/DataEditingPage.py
@@ -280,13 +280,13 @@ class DataEditingPage(templatePage):
 
 					if snpurl:
 						snpBrowserButton = HT.Href(url="#redirect", onClick="openNewWin('%s')" % snpurl)
-						snpBrowserButton_img = HT.Image("/images/snp_icon.jpg", name="addselect", alt=" View SNPs and Indels ", title=" View SNPs and Indels ", style="border:none;")
+						snpBrowserButton_img = HT.Image("/images/snp_icon.jpg", name="snpbrowser", alt=" View SNPs and Indels ", title=" View SNPs and Indels ", style="border:none;")
 						snpBrowserButton.append(snpBrowserButton_img)	
 						snpBrowserText = "SNPs"				
 
 				#XZ: Show GeneWiki for all species
 				geneWikiButton = HT.Href(url="#redirect", onClick="openNewWin('%s')" % (os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE) + "?FormID=geneWiki&symbol=%s" % thisTrait.symbol))
-				geneWikiButton_img = HT.Image("/images/genewiki_icon.jpg", name="addselect", alt=" Write or review comments about this gene ", title=" Write or review comments about this gene ", style="border:none;")
+				geneWikiButton_img = HT.Image("/images/genewiki_icon.jpg", name="genewiki", alt=" Write or review comments about this gene ", title=" Write or review comments about this gene ", style="border:none;")
 				geneWikiButton.append(geneWikiButton_img)
 				geneWikiText = 'GeneWiki'					
 
@@ -295,7 +295,7 @@ class DataEditingPage(templatePage):
 					 if _Species in ("mouse", "rat", "human"):
 						similarUrl = "%s?cmd=sch&gene=%s&alias=1&species=%s" % (os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE), thisTrait.symbol, _Species)
 						similarButton = HT.Href(url="#redirect", onClick="openNewWin('%s')" % similarUrl)
-						similarButton_img = HT.Image("/images/find_icon.jpg", name="addselect", alt=" Find similar expression data ", title=" Find similar expression data ", style="border:none;")
+						similarButton_img = HT.Image("/images/find_icon.jpg", name="similar", alt=" Find similar expression data ", title=" Find similar expression data ", style="border:none;")
 						similarButton.append(similarButton_img)
 						similarText = "Find"		
 				else:
@@ -416,15 +416,15 @@ class DataEditingPage(templatePage):
 					UTHSC_BLAT_URL = ""
 				
 				if UCSC_BLAT_URL:
-					verifyButton = HT.Href(url="#")
+					verifyButton = HT.Href(url="#", onClick="javascript:openNewWin('%s'); return false;" % UCSC_BLAT_URL)
 					verifyButtonImg = HT.Image("/images/verify_icon.jpg", name="verify", alt=" Check probe locations at UCSC ", 
-						title=" Check probe locations at UCSC ", onClick="javascript:openNewWin('%s'); return false;" % UCSC_BLAT_URL, style="border:none;")
+						title=" Check probe locations at UCSC ", style="border:none;")
 					verifyButton.append(verifyButtonImg)
 					verifyText = 'Verify'
 				if UTHSC_BLAT_URL:	
-					rnaseqButton = HT.Href(url="#")
+					rnaseqButton = HT.Href(url="#", onClick="javascript:openNewWin('%s'); return false;" % UTHSC_BLAT_URL)
 					rnaseqButtonImg = HT.Image("/images/rnaseq_icon.jpg", name="rnaseq", alt=" View probes, SNPs, and RNA-seq at UTHSC ", 
-						title=" View probes, SNPs, and RNA-seq at UTHSC ", onClick="javascript:openNewWin('%s'); return false;" % UTHSC_BLAT_URL, style="border:none;")
+						title=" View probes, SNPs, and RNA-seq at UTHSC ", style="border:none;")
 					rnaseqButton.append(rnaseqButtonImg)
 					rnaseqText = 'RNA-seq'											
 				tSpan.append(HT.BR())
@@ -444,8 +444,8 @@ class DataEditingPage(templatePage):
 				if probeResult[0] > 0:
 					probeurl = "%s?FormID=showProbeInfo&database=%s&ProbeSetID=%s&CellID=%s&RISet=%s&incparentsf1=ON" \
 						% (os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE), thisTrait.db, thisTrait.name, thisTrait.cellid, fd.RISet)
-					probeButton = HT.Href(url="#redirect", onClick="openNewWin('%s')" % probeurl)
-					probeButton_img = HT.Image("/images/probe_icon.jpg", name="addselect", alt=" Check sequence of probes ", title=" Check sequence of probes ", style="border:none;")
+					probeButton = HT.Href(url="#", onClick="javascript:openNewWin('%s'); return false;" % probeurl)
+					probeButton_img = HT.Image("/images/probe_icon.jpg", name="probe", alt=" Check sequence of probes ", title=" Check sequence of probes ", style="border:none;")
 					probeButton.append(probeButton_img)
 					probeText = "Probes"	
 
@@ -773,11 +773,11 @@ class DataEditingPage(templatePage):
 				if UCSC_BLAT_URL:
 					#verifyButton = HT.Href(url="#", onClick="openNewWin('%s')" % UCSC_BLAT_URL)
 					verifyButton = HT.Href(url="#")
-					verifyButtonImg = HT.Image("/images/verify_icon.jpg", name="addselect", alt=" Check probe locations at UCSC ", title=" Check probe locations at UCSC ", style="border:none;")
+					verifyButtonImg = HT.Image("/images/verify_icon.jpg", name="verify", alt=" Check probe locations at UCSC ", title=" Check probe locations at UCSC ", style="border:none;")
 					verifyButton.append(verifyButtonImg)	
 					verifyText = "Verify"
 					rnaseqButton = HT.Href(url="#", onClick="openNewWin('%s')" % UTHSC_BLAT_URL)
-					rnaseqButtonImg = HT.Image("/images/rnaseq_icon.jpg", name="addselect", alt=" View probes, SNPs, and RNA-seq at UTHSC ", title=" View probes, SNPs, and RNA-seq at UTHSC ", style="border:none;")
+					rnaseqButtonImg = HT.Image("/images/rnaseq_icon.jpg", name="rnaseq", alt=" View probes, SNPs, and RNA-seq at UTHSC ", title=" View probes, SNPs, and RNA-seq at UTHSC ", style="border:none;")
 					rnaseqButton.append(rnaseqButtonImg)			
 					rnaseqText = "RNA-seq"