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authorroot2012-05-08 18:39:56 -0500
committerroot2012-05-08 18:39:56 -0500
commitea46f42ee640928b92947bfb204c41a482d80937 (patch)
tree9b27a4eb852d12539b543c3efee9d2a47ef470f3 /web/webqtl/snpBrowser/snpBrowserUtils.py
parent056b5253fc3857b0444382aa39944f6344dc1ceb (diff)
downloadgenenetwork2-ea46f42ee640928b92947bfb204c41a482d80937.tar.gz
Add all the source codes into the github.
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+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+ # The columns that are to be displayed are chosen at the line about 1000, with categories["info"]; this initializes the columns and assigns a 'variable_name' :and: "Display Name"
+columnNames = {
+ # The following are for ALL VARIANTS
+ 'variant':"Variant Type",
+ 'snpname':"SNP ID", # SnpAll.Id
+ 'chromosome':"Chromosome",
+ 'mb':"Mb",
+ 'sourceName':"Source",
+ 'sourceCreated':"Source Created",
+ 'sourceAdded':"Source Added",
+ 'sourceId':"Source",
+ 'gene':'Gene',
+ # The following are for SNP VARIANTS
+ 'source':'Source',
+ 'chr':'Chr',
+ 'snpId':"Submitter ID", #SnpAll.SnpName
+ 'mbCelera':"Mb (CDS)",
+ 'rs':"ID",
+ 'function':"Function",
+ 'type':"Type",
+ 'majorCount':"Major Count",
+ 'minorCount':"Minor Count",
+ 'missingCount':"Missing Count",
+ 'class':"Class",
+ 'flanking5':"Flanking 5'",
+ 'flanking3':"Flanking 3'",
+ 'blatScore':"BLAT Score",
+ 'majorAllele':"Major Allele",
+ 'minorAllele':"Minor Allele",
+ 'shortAlleles':'Reference',
+ "Proximal_Gap_bp":"Gap",
+ 'domain':'Domain',
+ 'ncbi':'NCBI Annotation',
+ 'conservation':'ConScore',
+ # The following are for INDEL VARIANTS
+ 'indelId':"ID", # Indel.Id Indel
+ 'indelName':"ID", # Indel.Name
+ 'indelType':"Type", # Indel.Type
+ 'indelChr':"InDel Chr", # Indel.Chromosome
+ 'indelMb_s':"Mb Start", # Indel.Mb_start
+ 'indelMb_e':"Mb End", # IndelAll.Mb_end
+ 'indelStrand':"Strand", # IndelAll.Strand
+ 'indelSize':"Size", # IndelAll.Size
+ 'indelSeq':"Sequence", # IndelAll.Sequence
+} \ No newline at end of file