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authorzsloan2015-03-27 20:28:51 +0000
committerzsloan2015-03-27 20:28:51 +0000
commitd0911a04958a04042da02a334ccc528dae79cc17 (patch)
tree3c48e2e937c1dbeaf00a5697c87ed251afa5c8f1 /web/webqtl/snpBrowser/snpBrowserUtils.py
parenta840ad18e1fe3db98a359a159e9b9b72367a2839 (diff)
downloadgenenetwork2-d0911a04958a04042da02a334ccc528dae79cc17.tar.gz
Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'
Diffstat (limited to 'web/webqtl/snpBrowser/snpBrowserUtils.py')
-rwxr-xr-xweb/webqtl/snpBrowser/snpBrowserUtils.py71
1 files changed, 0 insertions, 71 deletions
diff --git a/web/webqtl/snpBrowser/snpBrowserUtils.py b/web/webqtl/snpBrowser/snpBrowserUtils.py
deleted file mode 100755
index 4da5c9cb..00000000
--- a/web/webqtl/snpBrowser/snpBrowserUtils.py
+++ /dev/null
@@ -1,71 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
- # The columns that are to be displayed are chosen at the line about 1000, with categories["info"]; this initializes the columns and assigns a 'variable_name' :and: "Display Name"
-columnNames = {
- # The following are for ALL VARIANTS
- 'variant':"Variant Type",
- 'snpname':"SNP ID", # SnpAll.Id
- 'chromosome':"Chromosome",
- 'mb':"Mb",
- 'sourceName':"Source",
- 'sourceCreated':"Source Created",
- 'sourceAdded':"Source Added",
- 'sourceId':"Source",
- 'gene':'Gene',
- # The following are for SNP VARIANTS
- 'source':'Source',
- 'chr':'Chr',
- 'snpId':"Submitter ID", #SnpAll.SnpName
- 'mbCelera':"Mb (CDS)",
- 'rs':"ID",
- 'function':"Function",
- 'type':"Type",
- 'majorCount':"Major Count",
- 'minorCount':"Minor Count",
- 'missingCount':"Missing Count",
- 'class':"Class",
- 'flanking5':"Flanking 5'",
- 'flanking3':"Flanking 3'",
- 'blatScore':"BLAT Score",
- 'majorAllele':"Major Allele",
- 'minorAllele':"Minor Allele",
- 'shortAlleles':'Reference',
- "Proximal_Gap_bp":"Gap",
- 'domain':'Domain',
- 'ncbi':'NCBI Annotation',
- 'conservation':'ConScore',
- # The following are for INDEL VARIANTS
- 'indelId':"ID", # Indel.Id Indel
- 'indelName':"ID", # Indel.Name
- 'indelType':"Type", # Indel.Type
- 'indelChr':"InDel Chr", # Indel.Chromosome
- 'indelMb_s':"Mb Start", # Indel.Mb_start
- 'indelMb_e':"Mb End", # IndelAll.Mb_end
- 'indelStrand':"Strand", # IndelAll.Strand
- 'indelSize':"Size", # IndelAll.Size
- 'indelSeq':"Sequence", # IndelAll.Sequence
-} \ No newline at end of file