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| author | root | 2012-05-22 12:47:55 -0500 |
|---|---|---|
| committer | root | 2012-05-22 12:47:55 -0500 |
| commit | 89dd9b4fe8e2e1011f28d8ff688bc9e14c344ef7 (patch) | |
| tree | 0850bb0fda13b3e35175d9cc7c1286c55ecac97c /web/webqtl/search | |
| parent | 8f48285647cfd6f7150c471ec7fd410518069245 (diff) | |
| download | genenetwork2-89dd9b4fe8e2e1011f28d8ff688bc9e14c344ef7.tar.gz | |
Latest version of GN source codes
Diffstat (limited to 'web/webqtl/search')
| -rwxr-xr-x[-rw-r--r--] | web/webqtl/search/SearchResultPage.py | 16 |
1 files changed, 14 insertions, 2 deletions
diff --git a/web/webqtl/search/SearchResultPage.py b/web/webqtl/search/SearchResultPage.py index 14d10731..029a54c4 100644..100755 --- a/web/webqtl/search/SearchResultPage.py +++ b/web/webqtl/search/SearchResultPage.py @@ -20,8 +20,10 @@ from base.templatePage import templatePage from utility import webqtlUtil from dbFunction import webqtlDatabaseFunction +import PubmedSearch + import logging -logging.basicConfig(filename="/tmp/gn_log", level=logging.INFO) +logging.basicConfig(filename="/tmp/gn_log_leiyan", level=logging.INFO) _log = logging.getLogger("search") class SearchResultPage(templatePage): @@ -155,7 +157,16 @@ class SearchResultPage(templatePage): geneIdListQuery = " geneId=%s" % string.join(string.split(geneIdListQuery), "-") self.ANDkeyword = fd.formdata.getfirst('ANDkeyword', "") + _log.info("self.ANDkeyword[1]: " + self.ANDkeyword) + pubmedSearchObject = PubmedSearch.PubmedSearch(self.ANDkeyword, self.database[0].id) + self.ANDkeyword = pubmedSearchObject.getNewS() + _log.info("self.ANDkeyword[2]: " + self.ANDkeyword) + self.ORkeyword = fd.formdata.getfirst('ORkeyword', "") + _log.info("self.ORkeyword[1]: " + self.ORkeyword) + pubmedSearchObject = PubmedSearch.PubmedSearch(self.ORkeyword, self.database[0].id) + self.ORkeyword = pubmedSearchObject.getNewS() + _log.info("self.ORkeyword[2]: "+self.ORkeyword) self.ORkeyword += geneIdListQuery @@ -485,7 +496,7 @@ class SearchResultPage(templatePage): self.results = [] for item in searchCountQuery: start_time = datetime.datetime.now() - _log.info("Executing query: %s"%(item)) + _log.info("111 Executing query: %s"%(item)) self.cursor.execute(item) allResults.append(self.cursor.fetchall()) end_time = datetime.datetime.now() @@ -497,6 +508,7 @@ class SearchResultPage(templatePage): #searchCountQuery retrieve all the results, for counting use only if searchCountQuery != searchQuery: for item in searchQuery: + _log.info("222 Executing query: %s"%(item)) self.cursor.execute(item) self.results.append(self.cursor.fetchall()) else: |