Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'

1 files changed, 0 insertions, 102 deletions

diff --git a/web/webqtl/maintainance/checkInfoFile.py b/web/webqtl/maintainance/checkInfoFile.py
deleted file mode 100755
index 6aa0d771..00000000
--- a/web/webqtl/maintainance/checkInfoFile.py
+++ /dev/null
@@ -1,102 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by NL 2011/01/28
-
-# created by Ning Liu 2011/01/27
-# This script is to check whether dataset related Info file exist or not; if not, the tempate Info file will be generated
-# This script should be only run at GeneNetwork production server
-
-import sys, os
-import MySQLdb
-
-current_file_name = __file__
-pathname = os.path.dirname( current_file_name )
-abs_path = os.path.abspath(pathname)
-sys.path.insert(0, abs_path + '/..')
-
-from base import template
-from base import webqtlConfig
-from base import header
-from base import footer
-
-# build MySql database connection
-con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER, user=webqtlConfig.DB_USER,passwd=webqtlConfig.DB_PASSWD)
-cursor = con.cursor()
-
-InfoFilePath =webqtlConfig.HTMLPATH+'dbdoc/'
-		
-# create template for Info file
-def createTemplateForInfoFile(datasetId=None,datasetFullName=None,InfoFileURL=None):
-	#template.py has been changed with dynamic header and footer
-	userInfo=""
-	headerInfo=header.header_string % userInfo
-	serverInfo=""
-	footerInfo=footer.footer_string % serverInfo
-	
-	title =datasetFullName
-	contentTitle = '''
-	<P class="title">%s<A HREF="/webqtl/main.py?FormID=editHtml"><img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A><BR><BR>
-	''' % datasetFullName	
-	content ='''
-	Accession number: <A HREF="/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=%s">GN%s</A></P>
-	<br><br>
-	This page will be updated soon. 
-	<br><br>
-	''' % (datasetId,datasetId)	
-	
-	body=contentTitle+content
-	# Note: 'templateParameters' includes parameters required for template.py
-	# templateParameters = ['title','basehref','js1','js2','layer','header','body', 'footer']
-	templateParameters =[title,'','','','',headerInfo,body,footerInfo]
-	
-	# build template file
-	templateFile=template.template % tuple(templateParameters)		
-	InfoFileHandler = open(InfoFileURL, 'w')
-	# write template file into Info .html file
-	InfoFileHandler.write(templateFile)
-	InfoFileHandler.close()
-	
-	
-# select all ProbeSet names from datatable 'ProbeSetFreeze'
-cursor.execute("select Id, Name, FullName from  ProbeSetFreeze ")		
-results = cursor.fetchall()
-for item in results:
-	datasetId = item[0]
-	datasetName =item[1]
-	datasetFullName =item[2]
-	InfoFileURL = InfoFilePath+datasetName+".html"
-	# check Info html file exist or not
-	if not os.path.exists(InfoFileURL):
-		createTemplateForInfoFile(datasetId=datasetId,datasetFullName=datasetFullName,InfoFileURL=InfoFileURL)
-
-		
-
-
-
-
-
-
-
-