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authorroot2012-05-08 18:39:56 -0500
committerroot2012-05-08 18:39:56 -0500
commitea46f42ee640928b92947bfb204c41a482d80937 (patch)
tree9b27a4eb852d12539b543c3efee9d2a47ef470f3 /web/webqtl/dataSharing/SharingInfoUpdatePage.py
parent056b5253fc3857b0444382aa39944f6344dc1ceb (diff)
downloadgenenetwork2-ea46f42ee640928b92947bfb204c41a482d80937.tar.gz
Add all the source codes into the github.
Diffstat (limited to 'web/webqtl/dataSharing/SharingInfoUpdatePage.py')
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1 files changed, 109 insertions, 0 deletions
diff --git a/web/webqtl/dataSharing/SharingInfoUpdatePage.py b/web/webqtl/dataSharing/SharingInfoUpdatePage.py
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+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+import MySQLdb
+
+from base.templatePage import templatePage
+from base import webqtlConfig
+from dbFunction import webqtlDatabaseFunction
+import SharingBody
+import SharingInfo
+
+#########################################
+# Sharing Info Update Page
+#########################################
+class SharingInfoUpdatePage(templatePage):
+
+ def __init__(self, fd=None):
+ templatePage.__init__(self, fd)
+ if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['admin']:
+ pass
+ else:
+ heading = "Editing Info"
+ detail = ["You don't have the permission to modify this file"]
+ self.error(heading=heading,detail=detail,error="Error")
+ return
+ cursor = webqtlDatabaseFunction.getCursor()
+ if (not cursor):
+ return
+ Id=fd.formdata.getvalue('Id')
+ GN_AccesionId=fd.formdata.getvalue('GN_AccesionId')
+ GEO_Series=fd.formdata.getvalue('GEO_Series')
+ Status=fd.formdata.getvalue('Status')
+ Title=fd.formdata.getvalue('Title')
+ Organism_Id=fd.formdata.getvalue('Organism_Id')
+ Organism=fd.formdata.getvalue('Organism')
+ Experiment_Type =fd.formdata.getvalue('Experiment_Type')
+ Summary=fd.formdata.getvalue('Summary')
+ Overall_Design=fd.formdata.getvalue('Overall_Design')
+ Contributor=fd.formdata.getvalue('Contributor')
+ Citation=fd.formdata.getvalue('Citation')
+ Submission_Date=fd.formdata.getvalue('Submission_Date')
+ Contact_Name=fd.formdata.getvalue('Contact_Name')
+ Emails=fd.formdata.getvalue('Emails')
+ Phone=fd.formdata.getvalue('Phone')
+ URL=fd.formdata.getvalue('URL')
+ Organization_Name=fd.formdata.getvalue('Organization_Name')
+ Department=fd.formdata.getvalue('Department')
+ Laboratory=fd.formdata.getvalue('Laboratory')
+ Street=fd.formdata.getvalue('Street')
+ City=fd.formdata.getvalue('City')
+ State=fd.formdata.getvalue('State')
+ ZIP=fd.formdata.getvalue('ZIP')
+ Country=fd.formdata.getvalue('Country')
+ Platforms=fd.formdata.getvalue('Platforms')
+ Samples=fd.formdata.getvalue('Samples')
+ Species=fd.formdata.getvalue('Species')
+ Tissue=fd.formdata.getvalue('Tissue')
+ Normalization=fd.formdata.getvalue('Normalization')
+ InbredSet=fd.formdata.getvalue('InbredSet')
+ InfoPageName=fd.formdata.getvalue('InfoPageName')
+ InfoPageTitle=fd.formdata.getvalue('InfoPageTitle')
+ About_Cases=fd.formdata.getvalue('About_Cases')
+ About_Tissue=fd.formdata.getvalue('About_Tissue')
+ About_Download=fd.formdata.getvalue('About_Download')
+ About_Array_Platform=fd.formdata.getvalue('About_Array_Platform')
+ About_Data_Values_Processing=fd.formdata.getvalue('About_Data_Values_Processing')
+ Data_Source_Acknowledge=fd.formdata.getvalue('Data_Source_Acknowledge')
+ AuthorizedUsers=fd.formdata.getvalue('AuthorizedUsers')
+ Progress=fd.formdata.getvalue('Progress')
+ if Id=='-1':
+ sharingInfoObject = SharingInfo.SharingInfo(GN_AccesionId, InfoPageName)
+ info, filelist = sharingInfoObject.getInfo()
+ if info:
+ heading = "Editing Info"
+ detail = ["The new dataset info record is duplicate."]
+ self.error(heading=heading, detail=detail, error="Error")
+ return
+ sql = """INSERT INTO InfoFiles SET GN_AccesionId=%s, GEO_Series=%s, Status=%s, Title=%s, Organism_Id=%s, Organism=%s, Experiment_Type=%s, Summary=%s, Overall_Design=%s, Contributor=%s, Citation=%s, Submission_Date=%s, Contact_Name=%s, Emails=%s, Phone=%s, URL=%s, Organization_Name=%s, Department=%s, Laboratory=%s, Street=%s, City=%s, State=%s, ZIP=%s, Country=%s, Platforms=%s, Samples=%s, Species=%s, Tissue=%s, Normalization=%s, InbredSet=%s, InfoPageName=%s, InfoPageTitle=%s, About_Cases=%s, About_Tissue=%s, About_Download=%s, About_Array_Platform=%s, About_Data_Values_Processing=%s, Data_Source_Acknowledge=%s, AuthorizedUsers=%s, Progreso=%s"""
+ cursor.execute(sql, tuple([GN_AccesionId, GEO_Series, Status, Title, Organism_Id, Organism, Experiment_Type, Summary, Overall_Design, Contributor, Citation, Submission_Date, Contact_Name, Emails, Phone, URL, Organization_Name, Department, Laboratory, Street, City, State, ZIP, Country, Platforms, Samples, Species, Tissue, Normalization, InbredSet, InfoPageName, InfoPageTitle, About_Cases, About_Tissue, About_Download, About_Array_Platform, About_Data_Values_Processing, Data_Source_Acknowledge, AuthorizedUsers, Progress]))
+ infoupdate="This record has been succesfully added."
+ else:
+ sql = """UPDATE InfoFiles SET GN_AccesionId=%s, GEO_Series=%s, Status=%s, Title=%s, Organism_Id=%s, Organism=%s, Experiment_Type=%s, Summary=%s, Overall_Design=%s, Contributor=%s, Citation=%s, Submission_Date=%s, Contact_Name=%s, Emails=%s, Phone=%s, URL=%s, Organization_Name=%s, Department=%s, Laboratory=%s, Street=%s, City=%s, State=%s, ZIP=%s, Country=%s, Platforms=%s, Samples=%s, Species=%s, Tissue=%s, Normalization=%s, InbredSet=%s, InfoPageName=%s, InfoPageTitle=%s, About_Cases=%s, About_Tissue=%s, About_Download=%s, About_Array_Platform=%s, About_Data_Values_Processing=%s, Data_Source_Acknowledge=%s, AuthorizedUsers=%s, Progreso=%s WHERE Id=%s"""
+ cursor.execute(sql, tuple([GN_AccesionId, GEO_Series, Status, Title, Organism_Id, Organism, Experiment_Type, Summary, Overall_Design, Contributor, Citation, Submission_Date, Contact_Name, Emails, Phone, URL, Organization_Name, Department, Laboratory, Street, City, State, ZIP, Country, Platforms, Samples, Species, Tissue, Normalization, InbredSet, InfoPageName, InfoPageTitle, About_Cases, About_Tissue, About_Download, About_Array_Platform, About_Data_Values_Processing, Data_Source_Acknowledge, AuthorizedUsers, Progress, Id]))
+ infoupdate="This record has been succesfully updated."
+ sharingInfoObject = SharingInfo.SharingInfo(GN_AccesionId, InfoPageName)
+ self.dict['body'] = sharingInfoObject.getBody(infoupdate=infoupdate) \ No newline at end of file