Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'

1 files changed, 0 insertions, 109 deletions

diff --git a/web/webqtl/dataSharing/SharingInfoUpdatePage.py b/web/webqtl/dataSharing/SharingInfoUpdatePage.py
deleted file mode 100755
index a70238b9..00000000
--- a/web/webqtl/dataSharing/SharingInfoUpdatePage.py
+++ /dev/null
@@ -1,109 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-import MySQLdb
-
-from base.templatePage import templatePage
-from base import webqtlConfig
-from dbFunction import webqtlDatabaseFunction
-import SharingBody
-import SharingInfo
-
-#########################################
-#      Sharing Info Update Page
-#########################################
-class SharingInfoUpdatePage(templatePage):
-
-		def __init__(self, fd=None):
-				templatePage.__init__(self, fd)
-				if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['admin']:
-						pass
-				else:
-						heading = "Editing Info"
-						detail = ["You don't have the permission to modify this file"]
-						self.error(heading=heading,detail=detail,error="Error")
-						return
-				cursor = webqtlDatabaseFunction.getCursor()
-				if (not cursor):
-						return
-				Id=fd.formdata.getvalue('Id')
-				GN_AccesionId=fd.formdata.getvalue('GN_AccesionId')
-				GEO_Series=fd.formdata.getvalue('GEO_Series')
-				Status=fd.formdata.getvalue('Status')
-				Title=fd.formdata.getvalue('Title')
-				Organism_Id=fd.formdata.getvalue('Organism_Id')
-				Organism=fd.formdata.getvalue('Organism')
-				Experiment_Type =fd.formdata.getvalue('Experiment_Type') 
-				Summary=fd.formdata.getvalue('Summary')
-				Overall_Design=fd.formdata.getvalue('Overall_Design')
-				Contributor=fd.formdata.getvalue('Contributor')
-				Citation=fd.formdata.getvalue('Citation')
-				Submission_Date=fd.formdata.getvalue('Submission_Date')
-				Contact_Name=fd.formdata.getvalue('Contact_Name')
-				Emails=fd.formdata.getvalue('Emails')
-				Phone=fd.formdata.getvalue('Phone')
-				URL=fd.formdata.getvalue('URL')
-				Organization_Name=fd.formdata.getvalue('Organization_Name')
-				Department=fd.formdata.getvalue('Department')
-				Laboratory=fd.formdata.getvalue('Laboratory')
-				Street=fd.formdata.getvalue('Street')
-				City=fd.formdata.getvalue('City')
-				State=fd.formdata.getvalue('State')
-				ZIP=fd.formdata.getvalue('ZIP')
-				Country=fd.formdata.getvalue('Country')
-				Platforms=fd.formdata.getvalue('Platforms')
-				Samples=fd.formdata.getvalue('Samples')
-				Species=fd.formdata.getvalue('Species')
-				Tissue=fd.formdata.getvalue('Tissue')
-				Normalization=fd.formdata.getvalue('Normalization')
-				InbredSet=fd.formdata.getvalue('InbredSet')
-				InfoPageName=fd.formdata.getvalue('InfoPageName')
-				InfoPageTitle=fd.formdata.getvalue('InfoPageTitle')
-				About_Cases=fd.formdata.getvalue('About_Cases')
-				About_Tissue=fd.formdata.getvalue('About_Tissue')
-				About_Download=fd.formdata.getvalue('About_Download')
-				About_Array_Platform=fd.formdata.getvalue('About_Array_Platform')
-				About_Data_Values_Processing=fd.formdata.getvalue('About_Data_Values_Processing')
-				Data_Source_Acknowledge=fd.formdata.getvalue('Data_Source_Acknowledge')
-				AuthorizedUsers=fd.formdata.getvalue('AuthorizedUsers')
-				Progress=fd.formdata.getvalue('Progress')
-				if Id=='-1':
-						sharingInfoObject = SharingInfo.SharingInfo(GN_AccesionId, InfoPageName)
-						info, filelist = sharingInfoObject.getInfo()
-						if info:
-								heading = "Editing Info"
-								detail = ["The new dataset info record is duplicate."]
-								self.error(heading=heading, detail=detail, error="Error")
-								return
-						sql = """INSERT INTO InfoFiles SET GN_AccesionId=%s, GEO_Series=%s, Status=%s, Title=%s, Organism_Id=%s, Organism=%s, Experiment_Type=%s, Summary=%s, Overall_Design=%s, Contributor=%s, Citation=%s, Submission_Date=%s, Contact_Name=%s, Emails=%s, Phone=%s, URL=%s, Organization_Name=%s, Department=%s, Laboratory=%s, Street=%s, City=%s, State=%s, ZIP=%s, Country=%s, Platforms=%s, Samples=%s, Species=%s, Tissue=%s, Normalization=%s, InbredSet=%s, InfoPageName=%s, InfoPageTitle=%s, About_Cases=%s, About_Tissue=%s, About_Download=%s, About_Array_Platform=%s, About_Data_Values_Processing=%s, Data_Source_Acknowledge=%s, AuthorizedUsers=%s, Progreso=%s"""
-						cursor.execute(sql, tuple([GN_AccesionId, GEO_Series, Status, Title, Organism_Id, Organism, Experiment_Type, Summary, Overall_Design, Contributor, Citation, Submission_Date, Contact_Name, Emails, Phone, URL, Organization_Name, Department, Laboratory, Street, City, State, ZIP, Country, Platforms, Samples, Species, Tissue, Normalization, InbredSet, InfoPageName, InfoPageTitle, About_Cases, About_Tissue, About_Download, About_Array_Platform, About_Data_Values_Processing, Data_Source_Acknowledge, AuthorizedUsers, Progress]))
-						infoupdate="This record has been succesfully added."
-				else:
-						sql = """UPDATE InfoFiles SET GN_AccesionId=%s, GEO_Series=%s, Status=%s, Title=%s, Organism_Id=%s, Organism=%s, Experiment_Type=%s, Summary=%s, Overall_Design=%s, Contributor=%s, Citation=%s, Submission_Date=%s, Contact_Name=%s, Emails=%s, Phone=%s, URL=%s, Organization_Name=%s, Department=%s, Laboratory=%s, Street=%s, City=%s, State=%s, ZIP=%s, Country=%s, Platforms=%s, Samples=%s, Species=%s, Tissue=%s, Normalization=%s, InbredSet=%s, InfoPageName=%s, InfoPageTitle=%s, About_Cases=%s, About_Tissue=%s, About_Download=%s, About_Array_Platform=%s, About_Data_Values_Processing=%s, Data_Source_Acknowledge=%s, AuthorizedUsers=%s, Progreso=%s WHERE Id=%s"""
-						cursor.execute(sql, tuple([GN_AccesionId, GEO_Series, Status, Title, Organism_Id, Organism, Experiment_Type, Summary, Overall_Design, Contributor, Citation, Submission_Date, Contact_Name, Emails, Phone, URL, Organization_Name, Department, Laboratory, Street, City, State, ZIP, Country, Platforms, Samples, Species, Tissue, Normalization, InbredSet, InfoPageName, InfoPageTitle, About_Cases, About_Tissue, About_Download, About_Array_Platform, About_Data_Values_Processing, Data_Source_Acknowledge, AuthorizedUsers, Progress, Id]))
-						infoupdate="This record has been succesfully updated."
-				sharingInfoObject = SharingInfo.SharingInfo(GN_AccesionId, InfoPageName)
-				self.dict['body'] = sharingInfoObject.getBody(infoupdate=infoupdate)
\ No newline at end of file