aboutsummaryrefslogtreecommitdiff
path: root/web/webqtl/collection/RemoveSelectionPage.py
diff options
context:
space:
mode:
authorzsloan2015-03-27 20:28:51 +0000
committerzsloan2015-03-27 20:28:51 +0000
commitd0911a04958a04042da02a334ccc528dae79cc17 (patch)
tree3c48e2e937c1dbeaf00a5697c87ed251afa5c8f1 /web/webqtl/collection/RemoveSelectionPage.py
parenta840ad18e1fe3db98a359a159e9b9b72367a2839 (diff)
downloadgenenetwork2-d0911a04958a04042da02a334ccc528dae79cc17.tar.gz
Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'
Diffstat (limited to 'web/webqtl/collection/RemoveSelectionPage.py')
-rwxr-xr-xweb/webqtl/collection/RemoveSelectionPage.py108
1 files changed, 0 insertions, 108 deletions
diff --git a/web/webqtl/collection/RemoveSelectionPage.py b/web/webqtl/collection/RemoveSelectionPage.py
deleted file mode 100755
index b9560c6b..00000000
--- a/web/webqtl/collection/RemoveSelectionPage.py
+++ /dev/null
@@ -1,108 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-
-
-import string
-
-from base.templatePage import templatePage
-from base.webqtlTrait import webqtlTrait
-from AddToSelectionPage import AddToSelectionPage
-
-#########################################
-# Remove Selection Page
-#########################################
-class RemoveSelectionPage(AddToSelectionPage):
-
- def __init__(self, fd):
-
- templatePage.__init__(self, fd)
-
- if not self.openMysql():
- return
-
- if not fd.genotype:
- fd.readGenotype()
-
- self.searchResult = fd.formdata.getvalue('searchResult')
- if self.searchResult:
- pass
- else:
- templatePage.__init__(self, fd)
- heading = 'Remove Selections'
- detail = ['You need to select at least one trait to remove from your selection.']
- self.error(heading=heading,detail=detail)
- return
-
- self.genSelection(fd=fd)
- self.writeHTML(fd)
-
-
-
- def genSelection(self, fd=None):
- collectionName = '%s_Select' % fd.RISet
-
- try:
- preSelection = fd.input_session_data[collectionName]
- preSelection = list(string.split(preSelection,','))
- except:
- preSelection = []
-
- if type("1") == type(self.searchResult):
- self.searchResult = [self.searchResult]
-
- if preSelection:
- for item in self.searchResult:
- try:
- preSelection.remove(item)
- except:
- pass
- self.searchResult = preSelection[:]
-
- if not self.searchResult:
- self.session_data_changed[collectionName] = ""
- return
-
- #self.searchResult.sort()
- for item in self.searchResult:
- if not item:
- self.searchResult.remove(item)
-
- searchResult2 = []
- self.theseTraits = []
- for item in self.searchResult:
- try:
- thisTrait = webqtlTrait(fullname=item, cursor=self.cursor)
- thisTrait.retrieveInfo(QTL=1)
- self.theseTraits.append(thisTrait)
- searchResult2.append(item)
- except:
- pass
-
- allTraitStr = string.join(searchResult2,',')
-
- self.session_data_changed[collectionName] = allTraitStr
-