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authorroot2012-05-08 18:39:56 -0500
committerroot2012-05-08 18:39:56 -0500
commitea46f42ee640928b92947bfb204c41a482d80937 (patch)
tree9b27a4eb852d12539b543c3efee9d2a47ef470f3 /web/webqtl/collection/ImportSelectionPage.py
parent056b5253fc3857b0444382aa39944f6344dc1ceb (diff)
downloadgenenetwork2-ea46f42ee640928b92947bfb204c41a482d80937.tar.gz
Add all the source codes into the github.
Diffstat (limited to 'web/webqtl/collection/ImportSelectionPage.py')
-rwxr-xr-xweb/webqtl/collection/ImportSelectionPage.py92
1 files changed, 92 insertions, 0 deletions
diff --git a/web/webqtl/collection/ImportSelectionPage.py b/web/webqtl/collection/ImportSelectionPage.py
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+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+#ImportSelectionPage.py
+
+import string
+
+from base.templatePage import templatePage
+from AddToSelectionPage import AddToSelectionPage
+
+
+#########################################
+# Import Selection Page
+#########################################
+class ImportSelectionPage(AddToSelectionPage):
+
+ def __init__(self, fd):
+
+ templatePage.__init__(self, fd)
+
+ if not self.openMysql():
+ return
+
+ if not fd.genotype:
+ fd.readGenotype()
+
+ self.importFile = fd.formdata.getvalue('importfile')
+ if not self.importFile:
+ templatePage.__init__(self, fd)
+ heading = 'Import Collection'
+ detail = ['The file you choose to import from doesn\'t exist.']
+ self.error(heading=heading,detail=detail)
+ return
+ self.importFile = string.split(self.importFile, '\n')
+
+ RISetLocate = 0
+ self.searchResult = []
+ for line in self.importFile:
+ if line and line[0] != '#':
+ if not RISetLocate:
+ RISetLocate = line
+ if RISetLocate != fd.RISet:
+ templatePage.__init__(self, fd)
+ heading = 'Import Collection'
+ detail = ['The file you choose to import from doesn\'t contain %s selection.' % fd.RISet]
+ self.error(heading=heading,detail=detail)
+ return
+ else:
+ self.searchResult.append(line)
+
+ if not self.searchResult:
+ templatePage.__init__(self, fd)
+ heading = 'Import Collection'
+ detail = ['The file you choose to import from is empty.']
+ self.error(heading=heading,detail=detail)
+ return
+
+ self.importMethod = fd.formdata.getvalue('importmethod')
+
+ if self.importMethod == 'replace':
+ checkPreSelection = 0
+ else:
+ checkPreSelection = 1
+
+ if self.genSelection(fd=fd, checkPreSelection = checkPreSelection):
+ self.writeHTML(fd)
+
+
+