Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'

1 files changed, 0 insertions, 97 deletions

diff --git a/web/webqtl/collection/AddUserInputToSelectionPage.py b/web/webqtl/collection/AddUserInputToSelectionPage.py
deleted file mode 100755
index 2c69a047..00000000
--- a/web/webqtl/collection/AddUserInputToSelectionPage.py
+++ /dev/null
@@ -1,97 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-#AddUserInputToSelectionPage.py
-
-import time
-
-from base import webqtlConfig
-from base.templatePage import templatePage
-from utility import webqtlUtil
-from AddToSelectionPage import AddToSelectionPage	
-			
-#########################################
-#      Add UserInput to Selection Page
-#########################################
-class AddUserInputToSelectionPage(AddToSelectionPage):
-
-	def __init__(self, fd):
-
-		templatePage.__init__(self, fd)
-
-		if not self.openMysql():
-			return
-
-		if not fd.genotype:
-			fd.readData(incf1 = 1)
-			
-		self.strainlist = []
-		self.vals = []
-		for i, strain in enumerate(fd.f1list + fd.strainlist):
-			if fd.allTraitData.has_key(strain) and fd.allTraitData[strain].val != None:
-				self.strainlist.append(strain)
-				self.vals.append([fd.allTraitData[strain].val, fd.allTraitData[strain].var])
-		
-		if len(self.strainlist) > webqtlConfig.KMININFORMATIVE:
-			pass
-		else:
-			templatePage.__init__(self, fd)
-			heading = 'Add to Collection'
-			detail = ['The number of informative strains in your trait is less than %d, this trait can not be added to the selection' % webqtlConfig.KMININFORMATIVE]
-			self.error(heading=heading,detail=detail)
-			return
-		
-		self.cursor.execute('delete Temp, TempData from Temp, TempData where Temp.DataId = TempData.Id and UNIX_TIMESTAMP()-UNIX_TIMESTAMP(CreateTime)>%d;' % webqtlConfig.MAXLIFE)
-		ct0 = time.localtime(time.time())
-		ct = time.strftime("%B/%d %H:%M:%S",ct0)
-		if not fd.identification:
-			fd.identification = "Unnamed Trait"
-		user_ip = fd.remote_ip
-		newDescription = '%s entered at %s from IP %s' % (fd.identification,ct,user_ip)
-		newProbeSetID = webqtlUtil.genRandStr("USER_Tmp_")
-		self.cursor.execute('SelecT max(id) from TempData')
-		try:
-			DataId = self.cursor.fetchall()[0][0] + 1
-		except:
-			DataId = 1
-		self.cursor.execute('SelecT Id  from InbredSet where Name = "%s"' % fd.RISet)
-		InbredSetId = self.cursor.fetchall()[0][0]
-				
-		self.cursor.execute('insert into Temp(Name,description, createtime,DataId,InbredSetId,IP) values(%s,%s,Now(),%s,%s,%s)' ,(newProbeSetID, newDescription, DataId,InbredSetId,user_ip))
-		
-		k = 0	
-		for Strain in self.strainlist:
-			self.cursor.execute('SelecT Strain.Id  from Strain,StrainXRef where Strain.Name = "%s" and Strain.Id = StrainXRef.StrainId and StrainXRef.InbredSetId=%d' % (Strain, InbredSetId))
-			StrainId = self.cursor.fetchall()[0][0]
-			self.cursor.execute('insert into TempData(Id, StrainId, value, SE) values(%s,%s,%s,%s)' , (DataId, StrainId, self.vals[k][0], self.vals[k][1]))
-			k += 1
-
-		self.searchResult = ['Temp::%s'	% newProbeSetID]
-
-		if self.genSelection(fd=fd):
-			self.writeHTML(fd)
-
-