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authorzsloan2015-03-27 20:28:51 +0000
committerzsloan2015-03-27 20:28:51 +0000
commitd0911a04958a04042da02a334ccc528dae79cc17 (patch)
tree3c48e2e937c1dbeaf00a5697c87ed251afa5c8f1 /web/webqtl/collection/AddUserInputToSelectionPage.py
parenta840ad18e1fe3db98a359a159e9b9b72367a2839 (diff)
downloadgenenetwork2-d0911a04958a04042da02a334ccc528dae79cc17.tar.gz
Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'
Diffstat (limited to 'web/webqtl/collection/AddUserInputToSelectionPage.py')
-rwxr-xr-xweb/webqtl/collection/AddUserInputToSelectionPage.py97
1 files changed, 0 insertions, 97 deletions
diff --git a/web/webqtl/collection/AddUserInputToSelectionPage.py b/web/webqtl/collection/AddUserInputToSelectionPage.py
deleted file mode 100755
index 2c69a047..00000000
--- a/web/webqtl/collection/AddUserInputToSelectionPage.py
+++ /dev/null
@@ -1,97 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-#AddUserInputToSelectionPage.py
-
-import time
-
-from base import webqtlConfig
-from base.templatePage import templatePage
-from utility import webqtlUtil
-from AddToSelectionPage import AddToSelectionPage
-
-#########################################
-# Add UserInput to Selection Page
-#########################################
-class AddUserInputToSelectionPage(AddToSelectionPage):
-
- def __init__(self, fd):
-
- templatePage.__init__(self, fd)
-
- if not self.openMysql():
- return
-
- if not fd.genotype:
- fd.readData(incf1 = 1)
-
- self.strainlist = []
- self.vals = []
- for i, strain in enumerate(fd.f1list + fd.strainlist):
- if fd.allTraitData.has_key(strain) and fd.allTraitData[strain].val != None:
- self.strainlist.append(strain)
- self.vals.append([fd.allTraitData[strain].val, fd.allTraitData[strain].var])
-
- if len(self.strainlist) > webqtlConfig.KMININFORMATIVE:
- pass
- else:
- templatePage.__init__(self, fd)
- heading = 'Add to Collection'
- detail = ['The number of informative strains in your trait is less than %d, this trait can not be added to the selection' % webqtlConfig.KMININFORMATIVE]
- self.error(heading=heading,detail=detail)
- return
-
- self.cursor.execute('delete Temp, TempData from Temp, TempData where Temp.DataId = TempData.Id and UNIX_TIMESTAMP()-UNIX_TIMESTAMP(CreateTime)>%d;' % webqtlConfig.MAXLIFE)
- ct0 = time.localtime(time.time())
- ct = time.strftime("%B/%d %H:%M:%S",ct0)
- if not fd.identification:
- fd.identification = "Unnamed Trait"
- user_ip = fd.remote_ip
- newDescription = '%s entered at %s from IP %s' % (fd.identification,ct,user_ip)
- newProbeSetID = webqtlUtil.genRandStr("USER_Tmp_")
- self.cursor.execute('SelecT max(id) from TempData')
- try:
- DataId = self.cursor.fetchall()[0][0] + 1
- except:
- DataId = 1
- self.cursor.execute('SelecT Id from InbredSet where Name = "%s"' % fd.RISet)
- InbredSetId = self.cursor.fetchall()[0][0]
-
- self.cursor.execute('insert into Temp(Name,description, createtime,DataId,InbredSetId,IP) values(%s,%s,Now(),%s,%s,%s)' ,(newProbeSetID, newDescription, DataId,InbredSetId,user_ip))
-
- k = 0
- for Strain in self.strainlist:
- self.cursor.execute('SelecT Strain.Id from Strain,StrainXRef where Strain.Name = "%s" and Strain.Id = StrainXRef.StrainId and StrainXRef.InbredSetId=%d' % (Strain, InbredSetId))
- StrainId = self.cursor.fetchall()[0][0]
- self.cursor.execute('insert into TempData(Id, StrainId, value, SE) values(%s,%s,%s,%s)' , (DataId, StrainId, self.vals[k][0], self.vals[k][1]))
- k += 1
-
- self.searchResult = ['Temp::%s' % newProbeSetID]
-
- if self.genSelection(fd=fd):
- self.writeHTML(fd)
-
-