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authorroot2012-05-08 18:39:56 -0500
committerroot2012-05-08 18:39:56 -0500
commitea46f42ee640928b92947bfb204c41a482d80937 (patch)
tree9b27a4eb852d12539b543c3efee9d2a47ef470f3 /web/webqtl/base/admin.py
parent056b5253fc3857b0444382aa39944f6344dc1ceb (diff)
downloadgenenetwork2-ea46f42ee640928b92947bfb204c41a482d80937.tar.gz
Add all the source codes into the github.
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+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+
+
+
+
+#XZ, 04/02/2009: we should put this into database.
+
+
+###LIST of databases used into gene name query
+
+
+ADMIN_search_dbs = {
+ 'rat': {'PERITONEAL FAT': ['FT_2A_0605_Rz'],
+ 'KIDNEY': ['KI_2A_0405_Rz'],
+ 'ADRENAL GLAND': ['HXB_Adrenal_1208'],
+ 'HEART': ['HXB_Heart_1208']
+ },
+ 'mouse': {'CEREBELLUM': ['CB_M_0305_R'],
+ 'STRIATUM': ['SA_M2_0905_R', 'SA_M2_0405_RC', 'UTHSC_1107_RankInv', 'Striatum_Exon_0209'],
+ 'HIPPOCAMPUS': ['HC_M2_0606_R', 'UMUTAffyExon_0209_RMA'],
+ 'WHOLE BRAIN': ['BR_M2_1106_R', 'IBR_M_0106_R', 'BRF2_M_0805_R', 'UCLA_BHF2_BRAIN_0605'],
+ 'LIVER': ['LV_G_0106_B', 'UCLA_BHF2_LIVER_0605'],
+ 'EYE': ['Eye_M2_0908_R'],
+ 'HEMATOPOIETIC STEM CELLS': ['HC_U_0304_R'],
+ 'KIDNEY': ['MA_M2_0806_R'],
+ 'MAMMARY TUMORS': ['MA_M_0704_R', 'NCI_Agil_Mam_Tum_RMA_0409'],
+ 'PREFRONTAL CORTEX': ['VCUSal_1206_R'],
+ 'SPLEEN': ['IoP_SPL_RMA_0509'],
+ 'NUCLEUS ACCUMBENS': ['VCUSalo_1007_R'],
+ 'NEOCORTEX': ['HQFNeoc_0208_RankInv'],
+ 'ADIPOSE': ['UCLA_BHF2_ADIPOSE_0605'],
+ 'RETINA': ['Illum_Retina_BXD_RankInv0410']
+ },
+ 'human': {
+ 'LYMPHOBLAST B CELL': ['Human_1008', 'UT_CEPH_RankInv0909'],
+ 'WHOLE BRAIN': ['GSE5281_F_RMA0709', 'GSE15222_F_RI_0409']
+ }
+ }
+
+
+###LIST of tissue alias
+
+ADMIN_tissue_alias = {'CEREBELLUM': ['Cb'],
+ 'STRIATUM': ['Str'],
+ 'HIPPOCAMPUS': ['Hip'],
+ 'WHOLE BRAIN': ['Brn'],
+ 'LIVER': ['Liv'],
+ 'EYE': ['Eye'],
+ 'PERITONEAL FAT': ['Fat'],
+ 'HEMATOPOIETIC STEM CELLS': ['Hsc'],
+ 'KIDNEY': ['Kid'],
+ 'ADRENAL GLAND': ['Adr'],
+ 'HEART': ['Hea'],
+ 'MAMMARY TUMORS': ['Mam'],
+ 'PREFRONTAL CORTEX': ['Pfc'],
+ 'SPLEEN': ['Spl'],
+ 'NUCLEUS ACCUMBENS': ['Nac'],
+ 'NEOCORTEX': ['Ctx'],
+ 'ADIPOSE': ['Wfat'],
+ 'RETINA': ['Ret']
+ }
+
+