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| author | zsloan | 2015-03-27 20:28:51 +0000 |
|---|---|---|
| committer | zsloan | 2015-03-27 20:28:51 +0000 |
| commit | d0911a04958a04042da02a334ccc528dae79cc17 (patch) | |
| tree | 3c48e2e937c1dbeaf00a5697c87ed251afa5c8f1 /web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006.htm | |
| parent | a840ad18e1fe3db98a359a159e9b9b72367a2839 (diff) | |
| download | genenetwork2-d0911a04958a04042da02a334ccc528dae79cc17.tar.gz | |
Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'
Diffstat (limited to 'web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006.htm')
| -rwxr-xr-x | web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006.htm | 25 |
1 files changed, 0 insertions, 25 deletions
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006.htm deleted file mode 100755 index f647c55a..00000000 --- a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006.htm +++ /dev/null @@ -1,25 +0,0 @@ -<html>
<head>
<meta http-equiv=Content-Type content="text/html; charset=macintosh">
<meta name=ProgId content=PowerPoint.Slide>
<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
<title>PowerPoint Presentation - Complex trait analysis, develop-ment, and
genomics</title>
<link title="Presentation File" type="application/powerpoint" rel=alternate
href="webqtl_demo2.ppt.ppt">
<script> -if ( ! top.PPTPRESENTATION ) { - window.location.replace( "endshow.htm" ); -} -</script>
<meta name=Description
content="Aug-15-05: Genetic versus Physical maps for App expression">
<link rel=Stylesheet href="master03_stylesheet.css">
<style media=print>
<!--.sld
{left:0px !important;
width:6.0in !important;
height:4.5in !important;
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<script language=JavaScript src=script.js></script><script language=JavaScript><!--
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<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
onresize="_RSW()" onkeypress="_KPH(event)">
<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
<div style='position:absolute;top:-.53%;left:1.72%;width:116.02%;height:8.65%;
filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
<div class=T style='mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
mso-text-indent-alt:0;position:absolute;top:18.36%;left:.79%;width:99.2%;
height:75.51%'><span style='font-family:Verdana;font-size:64%'><i>Genetic
versus Physical maps for App expression</i></span><span style='font-family:
Verdana;font-size:73%;mso-special-format:lastCR;display:none'><i><br>
</i></span></div>
</div>
<img border=0 src="slide0006_image071.png" style='position:absolute;top:8.83%;
left:1.72%;width:98.27%;height:39.92%'><img border=0
src="slide0006_image072.png" style='position:absolute;top:35.51%;left:1.85%;
width:98.27%;height:54.06%'>
<div class=O style='position:absolute;top:91.69%;left:5.96%;width:95.23%;
height:7.42%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
style='font-size:117%;color:#E9EB5D'><i>The difference between genetic and
physical scale is analogous to measuring the </i></span></span><span
style='position:absolute;top:42.85%;left:0%;width:96.66%'><span
style='font-size:117%;color:#E9EB5D'><i>separation between New York and Boston
in either travel hours or kilometers</i></span><span style='font-size:150%;
color:#E9EB5D'><i>.</i></span><span style='font-size:167%;color:#E9EB5D;
mso-special-format:lastCR;display:none'><i><br>
</i></span></span></div>
</div>
<div id=NotesObj style='display:none'>
<table style='color:white' border=0 width="100%">
<tr>
<td width=5 nowrap></td>
<td width="100%"></td>
</tr>
<tr>
<td colspan=1></td>
<td align=left colspan=1><font face=Verdana size=3>The map on the top has an
X-axis scale based on frequency of recombinations events between markers (B
to D transitions, see slide 19 for a color-coded example). These so-called
genetic maps are scaled in centimorgan (recombinations per 100 gametes). In contrast,
the physical map shown below the genetic map has an X-axis scale based on DNA
length measured in nucleotides or base-pairs. Notice the large difference
between the two maps in the size of Chr 19 (large on the genetic scale but
small on the physical scale).</font><br>
</td>
</tr>
<tr>
<td colspan=1></td>
<td align=left colspan=1><font face=Verdana size=3>Also notice the large
difference in the width of the chromosome 7 QTL peak. In mice, recombinations
occur with higher frequency toward the telomeric side (right side) of each
chromosome. As a result, genetic maps are stretched out more toward the
telomere relative to a physical map. The QTL on distal Chr 7 is therefore
actually more precisely mapped than might appear looking at the genetic map.</font><br>
</td>
</tr>
<tr>
<td colspan=1></td>
<td align=left colspan=1><font face=Verdana size=3>The physical scale is
becoming more useful than the genetic scale primarily because many other data
types can be easily superimposed on a physical map. You will see more
examples in the next several slides.</font><br>
</td>
</tr>
</table>
</div>
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</html>
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