Add all the source codes into the github.

author: root 2012-05-08 18:39:56 -0500
committer: root 2012-05-08 18:39:56 -0500
commit: ea46f42ee640928b92947bfb204c41a482d80937 (patch)
tree: 9b27a4eb852d12539b543c3efee9d2a47ef470f3 /web/tutorial/ppt/WebQTLDemo_files/slide0041.htm
parent: 056b5253fc3857b0444382aa39944f6344dc1ceb (diff)
download: genenetwork2-ea46f42ee640928b92947bfb204c41a482d80937.tar.gz
1 files changed, 93 insertions, 0 deletions
diff --git a/web/tutorial/ppt/WebQTLDemo_files/slide0041.htm b/web/tutorial/ppt/WebQTLDemo_files/slide0041.htm
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 10">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href=WebQTLDemo.ppt>
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Jun-19-03>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0041.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
+g_origHeight = 566;
+g_origWidth = 755;
+g_width = window.innerWidth - 10;
+g_height = window.innerHeight - 10;
+
+g_top = 0;
+g_left = 0;
+
+if ( g_width < ( g_origWidth * g_height /g_origHeight ) )
+	g_height = g_width * g_origHeight / g_origWidth;
+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
+document.SlideLayer.clip.top = 0;
+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.gif" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.02 * g_height; myleft = 0.06 * g_width; myheight = 0.14 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:" 0 ";mso-margin-left-alt:
+348;mso-text-indent-alt:56;mso-line-spacing:" 0 ";mso-margin-left-alt:348;
+mso-text-indent-alt:56'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Handdrawn sketch of the
+neighborhood</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.13 * g_height; myleft = 0.09 * g_width; myheight = 0.8 * g_height; mywidth = 0.8 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.09 * g_width;
+yy = 0.13 * g_height;
+ht = 0.8 * g_height;
+wd = 0.8 * g_width;
+document.write(
+'<img border=0 src="slide0009_image015.gif" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Many of the data types
+   in the previous slide are hot-linked and it is easy to generate a small web
+   of correlations between any transcript of interest and many other
+   transcripts. In this case, we have used green lines between transcripts that
+   have positive correlations, and red lines between transcripts that have
+   negative correlations. Correlations have been multiplied by 100. The
+   correlation of 0.96 between App and Hsp84-1 reads 96.<span
+   style="mso-spacerun: yes">&nbsp; </span>These are Pearson product moment
+   correlations and they are sensitive to outliers. If you prefer, you can
+   recompute Spearman rank order correlations.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Where did Ndr4 (lower
+   left) come from? It is not in the list in the previous slide. Actually it
+   is. Nomenclature changes rapidly. If you click on R74996 in the previous
+   slide (the active webqtl version) you will see that it now has a new symbol
+   and name.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>What are all of
+   the<span style="mso-spacerun: yes">&nbsp; </span>conventions in this
+   correlation network sketch.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Times size=3>1.</font><font
+   face=Helvetica size=3>The official gene symbol = App</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. OUr estimate of the
+   location of these gene in the Mouse Genome Sequencing Consoritum version 3
+   build (MGSCv3). Chromosome followed by the megabase position relative to the
+   centromere. (Mice only have one chromosome arm so this is an unambiguous
+   coordinate. )</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>3. The pair of numbers:
+   top is the highest expression among the strain set. The lower number is the
+   lowest expression of that transcript among the strain set.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>4. Vertical number on
+   the right side of each box: this is the probe set ID given by Affymetrix. We
+   have truncated these probe set IDs so you will not see the usual<span
+   style="mso-spacerun: yes">&nbsp; </span>�at�. A single gene may be
+   represented by more than 10 probe sets. Thus this ID number is essential to
+   identify the actual data source.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>5. Lower right corner:
+   a two digit number followed by plus and minus signs. These numbers are the
+   correlation value (absolute value) of the 100th best correlated transcript.
+   The plus and minus signs indicate the mean polarity of the correlations.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>6. The set of numbers
+   that read 2@140* etc. These are the approximate locations of additive effect
+   QTLs detected by WebQTL that we will describe in other slides. Read this as:
+   App has a suggestive QTL on Chr 2 at about 140 Mb and the D allele inherited
+   from DBA/2J confirms a higher expression level at this marker.<span
+   style="mso-spacerun: yes">&nbsp; </span>If there is no star symbol, then it
+   is not even formally �suggestive� but does make an interesting looking blip
+   on the QTL radar screen.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
author	root	2012-05-08 18:39:56 -0500
committer	root	2012-05-08 18:39:56 -0500
commit	ea46f42ee640928b92947bfb204c41a482d80937 (patch)
tree	9b27a4eb852d12539b543c3efee9d2a47ef470f3 /web/tutorial/ppt/WebQTLDemo_files/slide0041.htm
parent	056b5253fc3857b0444382aa39944f6344dc1ceb (diff)
download	genenetwork2-ea46f42ee640928b92947bfb204c41a482d80937.tar.gz