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| author | zsloan | 2015-03-27 20:28:51 +0000 |
|---|---|---|
| committer | zsloan | 2015-03-27 20:28:51 +0000 |
| commit | d0911a04958a04042da02a334ccc528dae79cc17 (patch) | |
| tree | 3c48e2e937c1dbeaf00a5697c87ed251afa5c8f1 /web/tutorial/ppt/WebQTLDemo_files/slide0008.htm | |
| parent | a840ad18e1fe3db98a359a159e9b9b72367a2839 (diff) | |
| download | genenetwork2-d0911a04958a04042da02a334ccc528dae79cc17.tar.gz | |
Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'
Diffstat (limited to 'web/tutorial/ppt/WebQTLDemo_files/slide0008.htm')
| -rwxr-xr-x | web/tutorial/ppt/WebQTLDemo_files/slide0008.htm | 25 |
1 files changed, 0 insertions, 25 deletions
diff --git a/web/tutorial/ppt/WebQTLDemo_files/slide0008.htm b/web/tutorial/ppt/WebQTLDemo_files/slide0008.htm deleted file mode 100755 index 7b1d488d..00000000 --- a/web/tutorial/ppt/WebQTLDemo_files/slide0008.htm +++ /dev/null @@ -1,25 +0,0 @@ -<html>
<head>
<meta http-equiv=Content-Type content="text/html; charset=macintosh">
<meta name=ProgId content=PowerPoint.Slide>
<meta name=Generator content="Microsoft Macintosh PowerPoint 10">
<link id=Main-File rel=Main-File href="WebQTLDemo.htm">
<title>PowerPoint Presentation - Complex trait analysis, develop-ment, and
genomics</title>
<link title="Presentation File" type="application/powerpoint" rel=alternate
href=WebQTLDemo.ppt>
<script> -if ( ! top.PPTPRESENTATION ) { - window.location.replace( "endshow.htm" ); -} -</script>
<meta name=Description content=Jun-19-03>
<link rel=Stylesheet href="master03_stylesheet.css">
<style media=print>
<!--.sld
{left:0px !important;
width:6.0in !important;
height:4.5in !important;
font-size:76% !important;}
-->
</style>
<script language=JavaScript src=script.js></script><script language=JavaScript><!--
-gId="slide0008.htm" -if ( !parent.base.g_done && (parent.base.msie < 0 ) ) { - parent.base.g_done = 1; - document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref); -} -if( !IsNts() ) Redirect( "PPTSld", gId ); -var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1; -//-->
-</script><script for=window event=onload language=JavaScript><!--
-if( !IsSldOrNts() ) return; -if( MakeNotesVis() ) return; -LoadSld( gId ); -playList();MakeSldVis(1); -//-->
-</script>
</head>
<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
onresize="_RSW()" onkeypress="_KPH(event)">
<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
visibility:hidden'><img src="master03_background.gif" v:shapes="_x0000_s1026"
style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
<div style='position:absolute;top:1.41%;left:3.31%;width:93.77%;height:14.66%;
filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
<div class=B style='mso-line-spacing:" 0 ";mso-margin-left-alt:348;mso-text-indent-alt:
56;position:absolute;top:0%;left:2.11%;width:96.46%;height:50.6%'><span
style='mso-special-format:nobullet;display:none;color:#FBFDB8;font-family:"Monotype Sorts";
font-size:99%'>l</span><span style='font-size:106%;color:#E9EB5D;mso-color-index:
3'>The </span><span style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
style='font-size:106%;color:#E9EB5D;mso-color-index:3'> transcript neighborhood</span></div>
</div>
<img border=0 src="slide0008_image014.gif" style='position:absolute;top:10.77%;
left:5.82%;width:66.62%;height:88.33%'>
<div class=O style='position:absolute;top:30.74%;left:75.23%;width:26.22%;
height:18.72%'><span style='position:absolute;top:0%;left:0%;width:91.91%'><span
style='font-size:150%;color:#E9EB5D;mso-color-index:3'><b>Question: </b></span><span
style='font-size:133%;color:#E9EB5D;mso-color-index:3'><b>How </b></span></span><span
style='position:absolute;top:21.69%;left:0%;width:97.47%'><span
style='font-size:133%;color:#E9EB5D;mso-color-index:3'><b>many transcripts </b></span></span><span
style='position:absolute;top:40.56%;left:0%;width:100.0%'><span
style='font-size:133%;color:#E9EB5D;mso-color-index:3'><b>have correlations </b></span></span><span
style='position:absolute;top:59.43%;left:0%;width:97.97%'><span
style='font-size:133%;color:#E9EB5D;mso-color-index:3'><b>>0.7? What does </b></span></span><span
style='position:absolute;top:79.24%;left:0%;width:85.35%'><span
style='font-size:133%;color:#E9EB5D;mso-color-index:3'><b>this imply.</b></span></span></div>
</div>
<div id=NotesObj style='display:none'>
<table style='color:white' border=0 width="100%">
<tr>
<td width=5 nowrap></td>
<td width="100%"></td>
</tr>
<tr>
<td colspan=1></td>
<td align=left colspan=1><font face=Helvetica size=3>The answer is a strong
Yes. A very large number of transcripts have correlations above 0.7 (absolute
value) with App mRNA. The precise number today is 208. But this will change
as we add more strains and arrays. In any case, this is a fairly large number
and all of these correlations are significant at alpha .05 even when
correcting for the enormous numbers<span style="mso-spacerun: yes">
</span>of tests (12422 tests).</font><br>
</td>
</tr>
<tr>
<td colspan=1></td>
<td align=left colspan=1><br>
</td>
</tr>
<tr>
<td colspan=1></td>
<td align=left colspan=1><font face=Helvetica size=3>What does this imply?</font><br>
</td>
</tr>
<tr>
<td colspan=1></td>
<td align=left colspan=1><br>
</td>
</tr>
<tr>
<td colspan=1></td>
<td align=left colspan=1><font face=Helvetica size=3>That there can be
massive codependence of expression variance among transcripts. App is NOT an
isolated instance. This is improtant biologically and statistically. From a
statistical perspective, we would like to know how many ÒindependentÓ test we
effectively are performing when we use array data in this way. Are we testing
12000 independent transcripts or just 1200 transcriptional ÒmodulesÓ each
with blurred boarders but each with about 10 effective members. There is no
answer yet, but we probaby have a large enough data set to begin to answer
this question.</font><br>
</td>
</tr>
</table>
</div>
<script language=JavaScript><!--
-function playList() { - -} -//-->
-</script>
</body>
</html>
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