Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'

1 files changed, 0 insertions, 319 deletions

diff --git a/web/javascript/thickbox.js b/web/javascript/thickbox.js
deleted file mode 100755
index 86bcf738..00000000
--- a/web/javascript/thickbox.js
+++ /dev/null
@@ -1,319 +0,0 @@
-/*
- * Thickbox 3.1 - One Box To Rule Them All.
- * By Cody Lindley (http://www.codylindley.com)
- * Copyright (c) 2007 cody lindley
- * Licensed under the MIT License: http://www.opensource.org/licenses/mit-license.php
-*/
-		  
-var tb_pathToImage = "images/loadingAnimation.gif";
-
-/*!!!!!!!!!!!!!!!!! edit below this line at your own risk !!!!!!!!!!!!!!!!!!!!!!!*/
-
-//on page load call tb_init
-$(document).ready(function(){   
-	tb_init('a.thickbox, area.thickbox, input.thickbox');//pass where to apply thickbox
-	imgLoader = new Image();// preload image
-	imgLoader.src = tb_pathToImage;
-});
-
-//add thickbox to href & area elements that have a class of .thickbox
-function tb_init(domChunk){
-	$(domChunk).click(function(){
-	var t = this.title || this.name || null;
-	var a = this.href || this.alt;
-	var g = this.rel || false;
-	tb_show(t,a,g);
-	this.blur();
-	return false;
-	});
-}
-
-function tb_show(caption, url, imageGroup) {//function called when the user clicks on a thickbox link
-
-	try {
-		if (typeof document.body.style.maxHeight === "undefined") {//if IE 6
-			$("body","html").css({height: "100%", width: "100%"});
-			$("html").css("overflow","hidden");
-			if (document.getElementById("TB_HideSelect") === null) {//iframe to hide select elements in ie6
-				$("body").append("<iframe id='TB_HideSelect'></iframe><div id='TB_overlay'></div><div id='TB_window'></div>");
-				$("#TB_overlay").click(tb_remove);
-			}
-		}else{//all others
-			if(document.getElementById("TB_overlay") === null){
-				$("body").append("<div id='TB_overlay'></div><div id='TB_window'></div>");
-				$("#TB_overlay").click(tb_remove);
-			}
-		}
-		
-		if(tb_detectMacXFF()){
-			$("#TB_overlay").addClass("TB_overlayMacFFBGHack");//use png overlay so hide flash
-		}else{
-			$("#TB_overlay").addClass("TB_overlayBG");//use background and opacity
-		}
-		
-		if(caption===null){caption="";}
-		$("body").append("<div id='TB_load'><img src='"+imgLoader.src+"' /></div>");//add loader to the page
-		$('#TB_load').show();//show loader
-		
-		var baseURL;
-	   if(url.indexOf("?")!==-1){ //ff there is a query string involved
-			baseURL = url.substr(0, url.indexOf("?"));
-	   }else{ 
-	   		baseURL = url;
-	   }
-	   
-	   var urlString = /\.jpg$|\.jpeg$|\.png$|\.gif$|\.bmp$/;
-	   var urlType = baseURL.toLowerCase().match(urlString);
-
-		if(urlType == '.jpg' || urlType == '.jpeg' || urlType == '.png' || urlType == '.gif' || urlType == '.bmp'){//code to show images
-				
-			TB_PrevCaption = "";
-			TB_PrevURL = "";
-			TB_PrevHTML = "";
-			TB_NextCaption = "";
-			TB_NextURL = "";
-			TB_NextHTML = "";
-			TB_imageCount = "";
-			TB_FoundURL = false;
-			if(imageGroup){
-				TB_TempArray = $("a[@rel="+imageGroup+"]").get();
-				for (TB_Counter = 0; ((TB_Counter < TB_TempArray.length) && (TB_NextHTML === "")); TB_Counter++) {
-					var urlTypeTemp = TB_TempArray[TB_Counter].href.toLowerCase().match(urlString);
-						if (!(TB_TempArray[TB_Counter].href == url)) {						
-							if (TB_FoundURL) {
-								TB_NextCaption = TB_TempArray[TB_Counter].title;
-								TB_NextURL = TB_TempArray[TB_Counter].href;
-								TB_NextHTML = "<span id='TB_next'>&nbsp;&nbsp;<a href='#'>Next &gt;</a></span>";
-							} else {
-								TB_PrevCaption = TB_TempArray[TB_Counter].title;
-								TB_PrevURL = TB_TempArray[TB_Counter].href;
-								TB_PrevHTML = "<span id='TB_prev'>&nbsp;&nbsp;<a href='#'>&lt; Prev</a></span>";
-							}
-						} else {
-							TB_FoundURL = true;
-							TB_imageCount = "Image " + (TB_Counter + 1) +" of "+ (TB_TempArray.length);											
-						}
-				}
-			}
-
-			imgPreloader = new Image();
-			imgPreloader.onload = function(){		
-			imgPreloader.onload = null;
-				
-			// Resizing large images - orginal by Christian Montoya edited by me.
-			var pagesize = tb_getPageSize();
-			var x = pagesize[0] - 150;
-			var y = pagesize[1] - 150;
-			var imageWidth = imgPreloader.width;
-			var imageHeight = imgPreloader.height;
-			if (imageWidth > x) {
-				imageHeight = imageHeight * (x / imageWidth); 
-				imageWidth = x; 
-				if (imageHeight > y) { 
-					imageWidth = imageWidth * (y / imageHeight); 
-					imageHeight = y; 
-				}
-			} else if (imageHeight > y) { 
-				imageWidth = imageWidth * (y / imageHeight); 
-				imageHeight = y; 
-				if (imageWidth > x) { 
-					imageHeight = imageHeight * (x / imageWidth); 
-					imageWidth = x;
-				}
-			}
-			// End Resizing
-			
-			TB_WIDTH = imageWidth + 30;
-			TB_HEIGHT = imageHeight + 60;
-			$("#TB_window").append("<a href='' id='TB_ImageOff' title='Close'><img id='TB_Image' src='"+url+"' width='"+imageWidth+"' height='"+imageHeight+"' alt='"+caption+"'/></a>" + "<div id='TB_caption'>"+caption+"<div id='TB_secondLine'>" + TB_imageCount + TB_PrevHTML + TB_NextHTML + "</div></div><div id='TB_closeWindow'><a href='#' id='TB_closeWindowButton' title='Close'>close</a> or Esc Key</div>"); 		
-			
-			$("#TB_closeWindowButton").click(tb_remove);
-			
-			if (!(TB_PrevHTML === "")) {
-				function goPrev(){
-					if($(document).unbind("click",goPrev)){$(document).unbind("click",goPrev);}
-					$("#TB_window").remove();
-					$("body").append("<div id='TB_window'></div>");
-					tb_show(TB_PrevCaption, TB_PrevURL, imageGroup);
-					return false;	
-				}
-				$("#TB_prev").click(goPrev);
-			}
-			
-			if (!(TB_NextHTML === "")) {		
-				function goNext(){
-					$("#TB_window").remove();
-					$("body").append("<div id='TB_window'></div>");
-					tb_show(TB_NextCaption, TB_NextURL, imageGroup);				
-					return false;	
-				}
-				$("#TB_next").click(goNext);
-				
-			}
-
-			document.onkeydown = function(e){ 	
-				if (e == null) { // ie
-					keycode = event.keyCode;
-				} else { // mozilla
-					keycode = e.which;
-				}
-				if(keycode == 27){ // close
-					tb_remove();
-				} else if(keycode == 190){ // display previous image
-					if(!(TB_NextHTML == "")){
-						document.onkeydown = "";
-						goNext();
-					}
-				} else if(keycode == 188){ // display next image
-					if(!(TB_PrevHTML == "")){
-						document.onkeydown = "";
-						goPrev();
-					}
-				}	
-			};
-			
-			tb_position();
-			$("#TB_load").remove();
-			$("#TB_ImageOff").click(tb_remove);
-			$("#TB_window").css({display:"block"}); //for safari using css instead of show
-			};
-			
-			imgPreloader.src = url;
-		}else{//code to show html
-			
-			var queryString = url.replace(/^[^\?]+\??/,'');
-			var params = tb_parseQuery( queryString );
-
-			TB_WIDTH = (params['width']*1) + 30 || 630; //defaults to 630 if no paramaters were added to URL
-			TB_HEIGHT = (params['height']*1) + 40 || 440; //defaults to 440 if no paramaters were added to URL
-			ajaxContentW = TB_WIDTH - 30;
-			ajaxContentH = TB_HEIGHT - 45;
-			
-			if(url.indexOf('TB_iframe') != -1){// either iframe or ajax window		
-					urlNoQuery = url.split('TB_');
-					$("#TB_iframeContent").remove();
-					if(params['modal'] != "true"){//iframe no modal
-						$("#TB_window").append("<div id='TB_title'><div id='TB_ajaxWindowTitle'>"+caption+"</div><div id='TB_closeAjaxWindow'><a href='#' id='TB_closeWindowButton' title='Close'>close</a> or Esc Key</div></div><iframe frameborder='0' hspace='0' src='"+urlNoQuery[0]+"' id='TB_iframeContent' name='TB_iframeContent"+Math.round(Math.random()*1000)+"' onload='tb_showIframe()' style='width:"+(ajaxContentW + 29)+"px;height:"+(ajaxContentH + 17)+"px;' > </iframe>");
-					}else{//iframe modal
-					$("#TB_overlay").unbind();
-						$("#TB_window").append("<iframe frameborder='0' hspace='0' src='"+urlNoQuery[0]+"' id='TB_iframeContent' name='TB_iframeContent"+Math.round(Math.random()*1000)+"' onload='tb_showIframe()' style='width:"+(ajaxContentW + 29)+"px;height:"+(ajaxContentH + 17)+"px;'> </iframe>");
-					}
-			}else{// not an iframe, ajax
-					if($("#TB_window").css("display") != "block"){
-						if(params['modal'] != "true"){//ajax no modal
-						$("#TB_window").append("<div id='TB_title'><div id='TB_ajaxWindowTitle'>"+caption+"</div><div id='TB_closeAjaxWindow'><a href='#' id='TB_closeWindowButton'>close</a> or Esc Key</div></div><div id='TB_ajaxContent' style='width:"+ajaxContentW+"px;height:"+ajaxContentH+"px'></div>");
-						}else{//ajax modal
-						$("#TB_overlay").unbind();
-						$("#TB_window").append("<div id='TB_ajaxContent' class='TB_modal' style='width:"+ajaxContentW+"px;height:"+ajaxContentH+"px;'></div>");	
-						}
-					}else{//this means the window is already up, we are just loading new content via ajax
-						$("#TB_ajaxContent")[0].style.width = ajaxContentW +"px";
-						$("#TB_ajaxContent")[0].style.height = ajaxContentH +"px";
-						$("#TB_ajaxContent")[0].scrollTop = 0;
-						$("#TB_ajaxWindowTitle").html(caption);
-					}
-			}
-					
-			$("#TB_closeWindowButton").click(tb_remove);
-			
-				if(url.indexOf('TB_inline') != -1){	
-					$("#TB_ajaxContent").append($('#' + params['inlineId']).children());
-					$("#TB_window").unload(function () {
-						$('#' + params['inlineId']).append( $("#TB_ajaxContent").children() ); // move elements back when you're finished
-					});
-					tb_position();
-					$("#TB_load").remove();
-					$("#TB_window").css({display:"block"}); 
-				}else if(url.indexOf('TB_iframe') != -1){
-					tb_position();
-					if($.browser.safari){//safari needs help because it will not fire iframe onload
-						$("#TB_load").remove();
-						$("#TB_window").css({display:"block"});
-					}
-				}else{
-					$("#TB_ajaxContent").load(url += "&random=" + (new Date().getTime()),function(){//to do a post change this load method
-						tb_position();
-						$("#TB_load").remove();
-						tb_init("#TB_ajaxContent a.thickbox");
-						$("#TB_window").css({display:"block"});
-					});
-				}
-			
-		}
-
-		if(!params['modal']){
-			document.onkeyup = function(e){ 	
-				if (e == null) { // ie
-					keycode = event.keyCode;
-				} else { // mozilla
-					keycode = e.which;
-				}
-				if(keycode == 27){ // close
-					tb_remove();
-				}	
-			};
-		}
-		
-	} catch(e) {
-		//nothing here
-	}
-}
-
-//helper functions below
-function tb_showIframe(){
-	$("#TB_load").remove();
-	$("#TB_window").css({display:"block"});
-}
-
-function tb_remove() {
- 	$("#TB_imageOff").unbind("click");
-	$("#TB_closeWindowButton").unbind("click");
-	$("#TB_window").fadeOut("fast",function(){$('#TB_window,#TB_overlay,#TB_HideSelect').trigger("unload").unbind().remove();});
-	$("#TB_load").remove();
-	if (typeof document.body.style.maxHeight == "undefined") {//if IE 6
-		$("body","html").css({height: "auto", width: "auto"});
-		$("html").css("overflow","");
-	}
-	document.onkeydown = "";
-	document.onkeyup = "";
-	return false;
-}
-
-function tb_position() {
-$("#TB_window").css({marginLeft: '-' + parseInt((TB_WIDTH / 2),10) + 'px', width: TB_WIDTH + 'px'});
-	if ( !(jQuery.browser.msie && jQuery.browser.version < 7)) { // take away IE6
-		$("#TB_window").css({marginTop: '-' + parseInt((TB_HEIGHT / 2),10) + 'px'});
-	}
-}
-
-function tb_parseQuery ( query ) {
-   var Params = {};
-   if ( ! query ) {return Params;}// return empty object
-   var Pairs = query.split(/[;&]/);
-   for ( var i = 0; i < Pairs.length; i++ ) {
-      var KeyVal = Pairs[i].split('=');
-      if ( ! KeyVal || KeyVal.length != 2 ) {continue;}
-      var key = unescape( KeyVal[0] );
-      var val = unescape( KeyVal[1] );
-      val = val.replace(/\+/g, ' ');
-      Params[key] = val;
-   }
-   return Params;
-}
-
-function tb_getPageSize(){
-	var de = document.documentElement;
-	var w = window.innerWidth || self.innerWidth || (de&&de.clientWidth) || document.body.clientWidth;
-	var h = window.innerHeight || self.innerHeight || (de&&de.clientHeight) || document.body.clientHeight;
-	arrayPageSize = [w,h];
-	return arrayPageSize;
-}
-
-function tb_detectMacXFF() {
-  var userAgent = navigator.userAgent.toLowerCase();
-  if (userAgent.indexOf('mac') != -1 && userAgent.indexOf('firefox')!=-1) {
-    return true;
-  }
-}
-
-