Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'

1 files changed, 0 insertions, 344 deletions

diff --git a/web/javascript/sortTrait.js b/web/javascript/sortTrait.js
deleted file mode 100755
index 7e617572..00000000
--- a/web/javascript/sortTrait.js
+++ /dev/null
@@ -1,344 +0,0 @@
-/* Generated Date : 2010-07-20  */ 
-var sArr = [
-{txt:'',val:''},
-{txt:'Database name',val:'1'},
-{txt:'ID number of trait',val:'2'},
-{txt:'Symbol, Gene, Phenotype',val:'3'},
-{txt:'Chr and Mb',val:'4'},
-{txt:'LRS or LOD',val:'5'},
-{txt:'Mean Value',val:'6'}
-
-];
-
-var gArr = [
-{txt:'',val:''},
-{txt:'Database name',val:'1'},
-{txt:'ID number of trait',val:'2'},
-{txt:'Symbol, Gene, Phenotype',val:'3'},
-{txt:'Chr and Mb',val:'4'},
-{txt:'LRS or LOD',val:'5'},
-{txt:'Mean Value',val:'6'}];
-
-var tArr = [
-{txt:'',val:''},
-{txt:'Database name',val:'1'},
-{txt:'ID number of trait',val:'2'},
-{txt:'Symbol, Gene, Phenotype',val:'3'},
-{txt:'Chr and Mb',val:'4'},
-{txt:'LRS or LOD',val:'5'},
-{txt:'Mean Value',val:'6'}];
-
-var lArr = [
- null,
-[1,2,3],
-[1,2,4],
-[1,2,5],
-[1,2,6],
-[1,3,2],
-[1,3,4],
-[1,3,5],
-[1,3,6],
-[1,4,2],
-[1,4,3],
-[1,4,5],
-[1,4,6],
-[1,5,2],
-[1,5,3],
-[1,5,4],
-[1,5,6],
-[1,6,2],
-[1,6,3],
-[1,6,4],
-[1,6,5],
-[2,1,3],
-[2,1,4],
-[2,1,5],
-[2,1,6],
-[2,3,1],
-[2,3,4],
-[2,3,5],
-[2,3,6],
-[2,4,1],
-[2,4,3],
-[2,4,5],
-[2,4,6],
-[2,5,1],
-[2,5,3],
-[2,5,4],
-[2,5,6],
-[2,6,1],
-[2,6,3],
-[2,6,4],
-[2,6,5],
-[3,1,2],
-[3,1,4],
-[3,1,5],
-[3,1,6],
-[3,2,1],
-[3,2,4],
-[3,2,5],
-[3,2,6],
-[3,4,1],
-[3,4,2],
-[3,4,5],
-[3,4,6],
-[3,5,1],
-[3,5,2],
-[3,5,4],
-[3,5,6],
-[3,6,1],
-[3,6,2],
-[3,6,4],
-[3,6,5],
-[4,1,2],
-[4,1,3],
-[4,1,5],
-[4,1,6],
-[4,2,1],
-[4,2,3],
-[4,2,5],
-[4,2,6],
-[4,3,1],
-[4,3,2],
-[4,3,5],
-[4,3,6],
-[4,5,1],
-[4,5,2],
-[4,5,3],
-[4,5,6],
-[4,6,1],
-[4,6,2],
-[4,6,4],
-[4,6,5],
-[5,1,2],
-[5,1,3],
-[5,1,4],
-[5,1,6],
-[5,2,1],
-[5,2,3],
-[5,2,4],
-[5,2,6],
-[5,3,1],
-[5,3,2],
-[5,3,4],
-[5,3,6],
-[5,4,1],
-[5,4,2],
-[5,4,3],
-[5,4,6],
-[5,6,1],
-[5,6,2],
-[5,6,3],
-[5,6,4],
-[6,1,2],
-[6,1,3],
-[6,1,4],
-[6,1,5],
-[6,2,1],
-[6,2,3],
-[6,2,4],
-[6,2,5],
-[6,3,1],
-[6,3,2],
-[6,3,4],
-[6,3,5],
-[6,4,1],
-[6,4,2],
-[6,4,3],
-[6,4,5],
-[6,5,1],
-[6,5,2],
-[6,5,3],
-[6,5,4]];
-
-/* 
-*  input: selectObjId (designated select menu, such as sort1, sort2, etc... )
-*  function: setting options value for select menu dynamically based on linkage array(lArr)
-*  output: null
-*/
-function fillOptions(selectObjId)
-{
-    
-		
-	if(selectObjId==null)
-	{
-		var sort1Obj = document.getElementsByName('sort1')[0];
-		
-		var len = sArr.length;
-		for (var i=1; i < len; i++) { 
-		// setting sort1' option
-		sort1Obj.options[i-1] = new Option(sArr[i].txt, sArr[i].val);
-
-		
-		}
-		fillOptions('sort1');
-	}else if(selectObjId=='sort1')
-	{
-	    var sort1Obj = document.getElementsByName('sort1')[0];
-		var sort2Obj = document.getElementsByName('sort2')[0];
-		var len = lArr.length;
-		var arr = [];
-		var idx = 0;
-		for (var i=1; i < len; i++) {
-			//get sort2 info from lArr
-			if(lArr[i][0]==(getIndexByValue('sort1',sort1Obj.value)).toString()&&!Contains(arr,lArr[i][1]))
-			{
-				arr[idx++]=lArr[i][1];
-			}  
-		}
-		idx=0;
-		len = arr.length;
-		removeOptions("sort2");
-		for (var i=0; i < len; i++) {
-			// setting sort2's option
-			sort2Obj.options[idx++] = new Option(gArr[arr[i]].txt, gArr[arr[i]].val); 
-		}
-		fillOptions('sort2');
-	}else if(selectObjId=='sort2')
-	{
-	    var sort1Obj = document.getElementsByName('sort1')[0];
-		var sort2Obj = document.getElementsByName('sort2')[0];
-		var sort3Obj = document.getElementsByName('sort3')[0];
-		var len = lArr.length;
-		var arr = [];
-		var idx = 0;
-		for (var i=1; i < len; i++) {
-			//get sort2 info from lArr
-			if(lArr[i][0]==(getIndexByValue('sort1',sort1Obj.value)).toString()&&lArr[i][1]==(getIndexByValue('sort2',sort2Obj.value)).toString()&&!Contains(arr,lArr[i][2]))
-			{
-				arr[idx++]=lArr[i][2];
-			}  
-		}
-		idx=0;
-		len = arr.length;
-		removeOptions("sort3");
-		for (var i=0; i < len; i++) {
-			// setting sort3's option
-			sort3Obj.options[idx++] = new Option(tArr[arr[i]].txt, tArr[arr[i]].val); 
-		}
-		fillOptions('sort3');
-	}
-}
-
-/* 
-*  input: arr (targeted array); obj (targeted value)
-*  function: check whether targeted array contains targeted value or not
-*  output: return true, if array contains targeted value, otherwise return false
-*/
-function Contains(arr,obj) { 
-	var i = arr.length; 
-	while (i--) { 
-		if (arr[i] == obj) { 
-		return true; 
-		}
-	} 
-	return false; 
-} 
-
-updateChocie();
-
-/* 
-* input: selectObj (designated select menu, such as sort1, sort2, etc... )
-* function: clear designated select menu's option
-* output: null
-*/
-function removeOptions(selectObj) {     
-	if (typeof selectObj != 'object'){         
-		selectObj = document.getElementsByName(selectObj)[0];
-	}        
-	var len = selectObj.options.length;      
-	for (var i=0; i < len; i++)     {         
-	// clear current selection       
-		selectObj.options[0] = null;    
-	} 
-} 
-
-/* 
-*  input: selectObjId (designated select menu, such as sort1, sort2, etc... )
-*         Value: target value
-*  function: retrieve Index info of target value in designated array
-*  output: index info
-*/
-function getIndexByValue(selectObjId,val)
-{
-	if(selectObjId=='sort1')
-	{
-		for(var i=1;i<sArr.length;i++)
-			if(sArr[i].val==val)
-				return i;
-	}else if(selectObjId=='sort2')
-	{
-		for(var i=1;i<gArr.length;i++)
-			if(gArr[i].val==val)
-				return i;
-	}else if(selectObjId=='sort3')
-	{
-		for(var i=1;i<tArr.length;i++)
-			if(tArr[i].val==val)
-				return i;
-	}
-	else return;
-}
-
-function setDefault(thisform){
-	setCookie('cookieTest', 'cookieTest', 1);
-	var cookieTest = getCookie('cookieTest');
-	delCookie('cookieTest');
-	if (cookieTest){
-		var defaultSort1 = thisform.sort1.value;
-		setCookie('defaultSort1', defaultSort1, 10);
-		var defaultSort2 = thisform.sort2.value;
-		setCookie('defaultSort2', defaultSort2, 10);
-		var defaultSort3 = thisform.sort3.value;
-		setCookie('defaultSort3', defaultSort3, 10);
-		updateChocie();			
-	}
-}
-/* 
-*  input: objId (designated select menu, such as sort1, sort2, etc... )
-*  		  val(targeted value)
-*  function: setting option's selected status for designated select menu based on target value, also update the following select menu 
-*  output: return true if selected status has been set, otherwise return false.
-*/
-function setChoice(objId,val)
-{
-	var Obj = document.getElementsByName(objId)[0];
-	var idx=-1;
-	for(i=0;i<Obj.options.length;i++){
-		if(Obj.options[i].value==val){
-			idx=i;
-			break;
-		}
-	}
-	if(idx>=0){
-		//setting option's selected status 
-		Obj.options[idx].selected=true;
-		//update the following select menu
-		fillOptions(objId)
-		return true;
-	}else{
-		return false;
-	}
-}
-
-// setting option's selected status based on default setting or cookie setting for sort1, sort2, and sort3 select menu
-function updateChocie(){
-	fillOptions(null);	
-	//define default value
-	var defaultSort1 = 1
-	var defaultSort2 = 3
-	var defaultSort3 = 4
-	
-	//if cookie exists, then use cookie value, otherwise use default value
-	var cookieSort1 = getCookie('defaultSort1');
-	if(cookieSort1)  defaultSort1= cookieSort1 
-	var cookieSort2 = getCookie('defaultSort2');
-	if(cookieSort2)  defaultSort2 = cookieSort2;
-	var cookieSort3 = getCookie('defaultSort3');
-	if(cookieSort3 )  defaultSort3 = cookieSort3; 
-
-	//setting option's selected status
-	if(!setChoice('sort1',defaultSort1)){return;}
-	if(!setChoice('sort2',defaultSort2)){return;}
-	if(!setChoice('sort3',defaultSort3)){return;}
-}
\ No newline at end of file