Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'

1 files changed, 0 insertions, 396 deletions

diff --git a/web/javascript/menu_new.js b/web/javascript/menu_new.js
deleted file mode 100755
index 454396b2..00000000
--- a/web/javascript/menu_new.js
+++ /dev/null
@@ -1,396 +0,0 @@
-// Title: tigra menu
-// Description: See the demo at url
-// URL: http://www.softcomplex.com/products/tigra_menu/
-// Version: 2.0 (commented source)
-// Date: 04-05-2003 (mm-dd-yyyy)
-// Contact: feedback@softcomplex.com (specify product title in the subject)
-// Tech. Support: http://www.softcomplex.com/forum/forumdisplay.php?fid=40
-// Notes: This script is free. Visit official site for further details.
-
-// --------------------------------------------------------------------------------
-// global collection containing all menus on current page
-var A_MENUS = [];
-var grpObj = Object;
-// --------------------------------------------------------------------------------
-// menu class
-function menu (a_items, a_tpl) {
-
-	// browser check
-	if (!document.body || !document.body.style)
-		return;
-
-	// store items structure
-	this.a_config = a_items;
-
-	// store template structure
-	this.a_tpl = a_tpl;
-
-	// get menu id
-	this.n_id = A_MENUS.length;
-
-	// declare collections
-	this.a_index = [];
-	this.a_children = [];
-
-	// assigh methods and event handlers
-	this.expand      = menu_expand;
-	this.collapse    = menu_collapse;
-
-	this.onclick     = menu_onclick;
-	this.onmouseout  = menu_onmouseout;
-	this.onmouseover = menu_onmouseover;
-	this.onmousedown = menu_onmousedown;
-
-	// default level scope description structure 
-	this.a_tpl_def = {
-		'block_top'  : 16,
-		'block_left' : 16,
-		'top'        : 20,
-		'left'       : 4,
-		'width'      : 120,
-		'height'     : 22,
-		'hide_delay' : 0,
-		'expd_delay' : 0,
-		'css'        : {
-			'inner' : '',
-			'outer' : ''
-		}
-	};
-	
-	// assign methods and properties required to imulate parent item
-	this.getprop = function (s_key) {
-		return this.a_tpl_def[s_key];
-	};
-
-	this.o_root = this;
-	this.n_depth = -1;
-	this.n_x = 0;
-	this.n_y = 0;
-
-	// 	init items recursively
-	for (n_order = 0; n_order < a_items.length; n_order++)
-		new menu_item(this, n_order);
-
-	// register self in global collection
-	A_MENUS[this.n_id] = this;
-
-	// make root level visible
-	for (var n_order = 0; n_order < this.a_children.length; n_order++)
-		this.a_children[n_order].e_oelement.style.visibility = 'hidden';
-}
-
-// --------------------------------------------------------------------------------
-function menu_collapse (n_id) {
-	// cancel item open delay
-	clearTimeout(this.o_showtimer);
-
-	// by default collapse to root level
-	var n_tolevel = (n_id ? this.a_index[n_id].n_depth : 0);
-	
-	// hide all items over the level specified
-	for (n_id = 0; n_id < this.a_index.length; n_id++) {
-		var o_curritem = this.a_index[n_id];
-		if (o_curritem.n_depth > n_tolevel && o_curritem.b_visible) {
-			o_curritem.e_oelement.style.visibility = 'hidden';
-			o_curritem.b_visible = false;
-		}
-	}
-
-	// reset current item if mouse has gone out of items
-	if (!n_id)
-		this.o_current = null;
-}
-
-// --------------------------------------------------------------------------------
-function menu_expand (n_id) {
-
-	// expand only when mouse is over some menu item
-	if (this.o_hidetimer)
-		return;
-
-	// lookup current item
-	var o_item = this.a_index[n_id];
-
-	// close previously opened items
-	if (this.o_current && this.o_current.n_depth >= o_item.n_depth)
-		this.collapse(o_item.n_id);
-	this.o_current = o_item;
-
-	// exit if there are no children to open
-	if (!o_item.a_children)
-		return;
-
-	// show direct child items
-	for (var n_order = 0; n_order < o_item.a_children.length; n_order++) {
-		var o_curritem = o_item.a_children[n_order];
-		o_curritem.e_oelement.style.visibility = 'visible';
-		o_curritem.b_visible = true;
-	}
-}
-
-// --------------------------------------------------------------------------------
-//
-// --------------------------------------------------------------------------------
-function menu_onclick (n_id) {
-	// don't go anywhere if item has no link defined
-	return Boolean(this.a_index[n_id].a_config[1]);
-}
-
-// --------------------------------------------------------------------------------
-function menu_onmouseout (n_id) {
-
-	// lookup new item's object	
-	var o_item = this.a_index[n_id];
-
-	// apply rollout
-	o_item.e_oelement.className = o_item.getstyle(0, 0);
-	o_item.e_ielement.className = o_item.getstyle(1, 0);
-	
-	// update status line	
-	o_item.upstatus(7);
-
-	// run mouseover timer
-	this.o_hidetimer = setTimeout('A_MENUS['+ this.n_id +'].collapse();',
-		o_item.getprop('hide_delay'));
-}
-
-// --------------------------------------------------------------------------------
-function menu_onmouseover (n_id) {
-
-	// cancel mouseoute menu close and item open delay
-	clearTimeout(this.o_hidetimer);
-	this.o_hidetimer = null;
-	clearTimeout(this.o_showtimer);
-
-	// lookup new item's object	
-	var o_item = this.a_index[n_id];
-
-	// update status line	
-	o_item.upstatus();
-
-	// apply rollover
-	o_item.e_oelement.className = o_item.getstyle(0, 1);
-	o_item.e_ielement.className = o_item.getstyle(1, 1);
-	
-	// if onclick open is set then no more actions required
-	if (o_item.getprop('expd_delay') < 0)
-		return;
-
-	// run expand timer
-	this.o_showtimer = setTimeout('A_MENUS['+ this.n_id +'].expand(' + n_id + ');',
-		o_item.getprop('expd_delay'));
-
-}
-
-// --------------------------------------------------------------------------------
-// called when mouse button is pressed on menu item
-// --------------------------------------------------------------------------------
-function menu_onmousedown (n_id) {
-	
-	// lookup new item's object	
-	var o_item = this.a_index[n_id];
-
-	// apply mouse down style
-	o_item.e_oelement.className = o_item.getstyle(0, 2);
-	o_item.e_ielement.className = o_item.getstyle(1, 2);
-
-	this.expand(n_id);
-//	this.items[id].switch_style('onmousedown');
-}
-
-
-// --------------------------------------------------------------------------------
-// menu item Class
-function menu_item (o_parent, n_order) {
-
-	// store parameters passed to the constructor
-	this.n_depth  = o_parent.n_depth + 1;
-	this.a_config = o_parent.a_config[n_order + (this.n_depth ? 3 : 0)];
-
-	// return if required parameters are missing
-	if (!this.a_config) return;
-
-	// store info from parent item
-	this.o_root    = o_parent.o_root;
-	this.o_parent  = o_parent;
-	this.n_order   = n_order;
-
-	// register in global and parent's collections
-	this.n_id = this.o_root.a_index.length;
-	this.o_root.a_index[this.n_id] = this;
-	o_parent.a_children[n_order] = this;
-
-	// calculate item's coordinates
-	var o_root = this.o_root,
-		a_tpl  = this.o_root.a_tpl;
-
-	// assign methods
-	this.getprop  = mitem_getprop;
-	this.getstyle = mitem_getstyle;
-	this.upstatus = mitem_upstatus;
-	
-	//relative positioning
-	if (this.o_parent == this.o_root){
-		linkedObject = document.getElementById(this.a_config[0]);
-		if (!linkedObject){
-			this.itemLeft = 200;
-			this.itemTop = 200;
-		}
-		else{
-			//alert(linkedObject.x+linkedObject.width/2 );
-			grpObj[this.a_config[0]] = this.n_id;
-			this.itemTop = findPosY(linkedObject);//linkedObject.height/4;
-			this.itemLeft = findPosX(linkedObject)+5;
-		}
-	}
-	else{
-		this.itemLeft = this.getprop('left');
-		this.itemTop = this.getprop('top');
-	}
-	
-	if (this.itemLeft.length > 0){
-		this.itemLeft = this.itemLeft[n_order];}
-	
-	this.itemWidth = this.getprop('width');
-	if (this.itemWidth.length > 0){
-		this.itemWidth = this.itemWidth[n_order];}
-	
-	this.itemSubWidth = this.getprop('subwidth');
-	if ((this.o_parent != this.o_root) && (this.o_parent.itemSubWidth.length > 0)){
-		this.itemWidth = this.o_parent.itemSubWidth[this.o_parent.n_order];}
-	
-	this.n_x = (this.o_parent == this.o_root)
-		? this.itemLeft
-		:(n_order?
-		o_parent.a_children[n_order - 1].n_x + this.itemLeft
-		: o_parent.n_x +  this.getprop('block_left'));
-
-	this.n_y = (this.o_parent == this.o_root)
-		? this.itemTop
-		:(n_order?
-		o_parent.a_children[n_order - 1].n_y + this.itemTop
-		: o_parent.n_y +  this.getprop('block_top'));
-	//this.n_y = n_order
-	//	? o_parent.a_children[n_order - 1].n_y + this.getprop('top')
-	//	: o_parent.n_y + this.getprop('block_top');
-
-	// generate item's HMTL
-	document.write (
-		'<a id="e' + o_root.n_id + '_'
-			+ this.n_id +'o" class="' + this.getstyle(0, 0) + '" href="' + this.a_config[1] + '"'
-			+ (this.a_config[2] && this.a_config[2] ? ' target="'
-			+ this.a_config[2] + '"' : '') + ' style="position: absolute; top: '
-			+ this.n_y + 'px; left: ' + this.n_x + 'px; width: '
-			+ this.itemWidth + 'px; height: '
-			+ this.getprop('height') + 'px; visibility: hidden;'
-			+' z-index: ' + this.n_depth + ';" '
-			+ 'onclick="return A_MENUS[' + o_root.n_id + '].onclick('
-			+ this.n_id + ');" onmouseout="A_MENUS[' + o_root.n_id + '].onmouseout('
-			+ this.n_id + ');" onmouseover="A_MENUS[' + o_root.n_id + '].onmouseover('
-			+ this.n_id + ');" onmousedown="A_MENUS[' + o_root.n_id + '].onmousedown('
-			+ this.n_id + ');"><div  id="e' + o_root.n_id + '_'
-			+ this.n_id +'i" class="' + this.getstyle(1, 0) + '">'
-			+ (this.a_config.length > 3 ? "<img src='/images/nextsign.gif' border=0 valign='top' align='right'>":"")
-			+ this.a_config[0] + "</div></a>\n"
-		);
-	if (this.n_id == -1){
-	}
-	this.e_ielement = document.getElementById('e' + o_root.n_id + '_' + this.n_id + 'i');
-	this.e_oelement = document.getElementById('e' + o_root.n_id + '_' + this.n_id + 'o');
-
-	this.b_visible = !this.n_depth;
-
-	// no more initialization if leaf
-	if (this.a_config.length < 4)
-		return;
-
-	// node specific methods and properties
-	this.a_children = [];
-
-	// init downline recursively
-	for (var n_order = 0; n_order < this.a_config.length - 3; n_order++)
-		new menu_item(this, n_order);
-}
-
-// --------------------------------------------------------------------------------
-// reads property from template file, inherits from parent level if not found
-// ------------------------------------------------------------------------------------------
-function mitem_getprop (s_key) {
-
-	// check if value is defined for current level
-	var s_value = null,
-		a_level = this.o_root.a_tpl[this.n_depth];
-
-	// return value if explicitly defined
-	if (a_level)
-		s_value = a_level[s_key];
-
-	// request recursively from parent levels if not defined
-	return (s_value == null ? this.o_parent.getprop(s_key) : s_value);
-}
-// --------------------------------------------------------------------------------
-// reads property from template file, inherits from parent level if not found
-// ------------------------------------------------------------------------------------------
-function mitem_getstyle (n_pos, n_state) {
-
-	var a_css = this.getprop('css');
-	var a_oclass = a_css[n_pos ? 'inner' : 'outer'];
-
-	// same class for all states	
-	if (typeof(a_oclass) == 'string')
-		return a_oclass;
-
-	// inherit class from previous state if not explicitly defined
-	for (var n_currst = n_state; n_currst >= 0; n_currst--)
-		if (a_oclass[n_currst])
-			return a_oclass[n_currst];
-}
-
-// ------------------------------------------------------------------------------------------
-// updates status bar message of the browser
-// ------------------------------------------------------------------------------------------
-function mitem_upstatus (b_clear) {
-	window.setTimeout("window.status=unescape('" + (b_clear
-		? ''
-		: (this.a_config[2] && this.a_config[2]['sb']
-			? escape(this.a_config[2]['sb'])
-			: escape(this.a_config[0]) + (this.a_config[1]
-				? ' ('+ escape(this.a_config[1]) + ')'
-				: ''))) + "')", 10);
-}
-
-// --------------------------------------------------------------------------------
-// that's all folks
-
-//http://www.quirksmode.org/js/findpos.html
-function findPosX(obj)
-{
-        var curleft = 0;
-        if (obj.offsetParent)
-        {
-                while (obj.offsetParent)
-                {
-                        curleft += obj.offsetLeft
-                        obj = obj.offsetParent;
-                }
-        }
-        else if (obj.x)
-                curleft += obj.x;
-        return curleft;
-}
-
-function findPosY(obj)
-{
-        var curtop = 0;
-        if (obj.offsetParent)
-        {
-                while (obj.offsetParent)
-                {
-                        curtop += obj.offsetTop
-                        obj = obj.offsetParent;
-                }
-        }
-        else if (obj.y)
-                curtop += obj.y;
-        return curtop;
-}