Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'

1 files changed, 0 insertions, 109 deletions

diff --git a/web/javascript/menu_items.js b/web/javascript/menu_items.js
deleted file mode 100755
index 9c3eee4b..00000000
--- a/web/javascript/menu_items.js
+++ /dev/null
@@ -1,109 +0,0 @@
-/*
-  --- menu items --- 
-  note that this structure has changed its format since previous version.
-  additional third parameter is added for item scope settings.
-  Now this structure is compatible with Tigra Menu GOLD.
-  Format description can be found in product documentation.
-*/
-var MENU_ITEMS = [
-	['menu_grp1', null, null,
-		['GeneNetwork Intro', '/home.html'],
-		['Enter Trait Data', '/webqtl/main.py?FormID=submitSingleTrait'],
-		['Batch Submission', '/webqtl/main.py?FormID=batSubmit'],
-	],
-	['menu_grp2', null, null,
-		['Search Databases', '/'],
-		['Tissue Correlation', '/webqtl/main.py?FormID=tissueCorrelation'],
-		['SNP Browser', '/webqtl/main.py?FormID=snpBrowser'],
-		['Gene Wiki', '/webqtl/main.py?FormID=geneWiki'],
-		['Interval Analyst', '/webqtl/main.py?FormID=intervalAnalyst'],
-		['QTLminer', '/webqtl/main.py?FormID=qtlminer'],
-		['GenomeGraph', '/dbResults.html'],
-		['Trait Collections',null,null,
-['Human', null, null, 
-	['CEPH-2004', '/webqtl/main.py?FormID=dispSelection&RISet=CEPH-2004'], 
-	['AD-cases-controls', '/webqtl/main.py?FormID=dispSelection&RISet=AD-cases-controls'], 
-	['AD-cases-controls-Myers', '/webqtl/main.py?FormID=dispSelection&RISet=AD-cases-controls-Myers'], 
-	['CEPH-2009', '/webqtl/main.py?FormID=dispSelection&RISet=CEPH-2009'], 
-	['HLC', '/webqtl/main.py?FormID=dispSelection&RISet=HLC'], 
-	['CANDLE', '/webqtl/main.py?FormID=dispSelection&RISet=CANDLE'], 
-	['HB', '/webqtl/main.py?FormID=dispSelection&RISet=HB'], 
-	['HSB', '/webqtl/main.py?FormID=dispSelection&RISet=HSB'], 
-],
-['Macaque monkey', null, null, 
-	['Macaca-fasicularis', '/webqtl/main.py?FormID=dispSelection&RISet=Macaca-fasicularis'], 
-],
-['Mouse', null, null, 
-	['BXD', '/webqtl/main.py?FormID=dispSelection&RISet=BXD'], 
-	['B6D2F2', '/webqtl/main.py?FormID=dispSelection&RISet=B6D2F2'], 
-	['AXBXA', '/webqtl/main.py?FormID=dispSelection&RISet=AXBXA'], 
-	['AKXD', '/webqtl/main.py?FormID=dispSelection&RISet=AKXD'], 
-	['B6BTBRF2', '/webqtl/main.py?FormID=dispSelection&RISet=B6BTBRF2'], 
-	['BXH', '/webqtl/main.py?FormID=dispSelection&RISet=BXH'], 
-	['CXB', '/webqtl/main.py?FormID=dispSelection&RISet=CXB'], 
-	['LXS', '/webqtl/main.py?FormID=dispSelection&RISet=LXS'], 
-	['BDF2-2005', '/webqtl/main.py?FormID=dispSelection&RISet=BDF2-2005'], 
-	['MDP', '/webqtl/main.py?FormID=dispSelection&RISet=MDP'], 
-	['NZBXFVB-N2', '/webqtl/main.py?FormID=dispSelection&RISet=NZBXFVB-N2'], 
-	['BHF2', '/webqtl/main.py?FormID=dispSelection&RISet=BHF2'], 
-	['BDF2-1999', '/webqtl/main.py?FormID=dispSelection&RISet=BDF2-1999'], 
-	['CTB6F2', '/webqtl/main.py?FormID=dispSelection&RISet=CTB6F2'], 
-	['BHHBF2', '/webqtl/main.py?FormID=dispSelection&RISet=BHHBF2'], 
-	['HS', '/webqtl/main.py?FormID=dispSelection&RISet=HS'], 
-	['HS-CC', '/webqtl/main.py?FormID=dispSelection&RISet=HS-CC'], 
-],
-['Rat', null, null, 
-	['HXBBXH', '/webqtl/main.py?FormID=dispSelection&RISet=HXBBXH'], 
-	['SRxSHRSPF2', '/webqtl/main.py?FormID=dispSelection&RISet=SRxSHRSPF2'], 
-],
-['Drosophila', null, null, 
-	['Oregon-R_x_2b3', '/webqtl/main.py?FormID=dispSelection&RISet=Oregon-R_x_2b3'], 
-	['DGRP', '/webqtl/main.py?FormID=dispSelection&RISet=DGRP'], 
-],
-['Arabidopsis thaliana', null, null, 
-	['BayXSha', '/webqtl/main.py?FormID=dispSelection&RISet=BayXSha'], 
-	['ColXCvi', '/webqtl/main.py?FormID=dispSelection&RISet=ColXCvi'], 
-	['ColXBur', '/webqtl/main.py?FormID=dispSelection&RISet=ColXBur'], 
-],
-['Barley', null, null, 
-	['SXM', '/webqtl/main.py?FormID=dispSelection&RISet=SXM'], 
-	['QSM', '/webqtl/main.py?FormID=dispSelection&RISet=QSM'], 
-],
-['Soybean', null, null, 
-	['J12XJ58F2', '/webqtl/main.py?FormID=dispSelection&RISet=J12XJ58F2'], 
-],
-['Tomato', null, null, 
-	['LXP', '/webqtl/main.py?FormID=dispSelection&RISet=LXP'], 
-],
-		],
-		['Scriptable Interface', '/CGIDoc.html'],
-		/* ['Simple Query Interface', '/GUI.html'], */
-		['Database Information',null,null,
-			['Database Schema', '/webqtl/main.py?FormID=schemaShowPage'],
-		],
-		['Data Sharing', '/webqtl/main.py?FormID=sharing'],
-		['Microarray Annotations', '/webqtl/main.py?FormID=annotation'],
-	],
-	['menu_grp3', null, null,
-		['Movies','http://www.genenetwork.org/tutorial/movies'],
-		['Tutorials', null, null, 
-                ['GN Barley Tutorial','/tutorial/pdf/GN_Barley_Tutorial.pdf'],
-                ['GN Powerpoint', '/tutorial/ppt/index.html']],
-		['HTML Tour','/tutorial/WebQTLTour/'],
-		['FAQ','/faq.html'],
-		['Glossary of Terms','/glossary.html'],
-		['GN MediaWiki','http://wiki.genenetwork.org/'],
-	],
-	['menu_grp4', '/whats_new.html'
-	],
-	['menu_grp5', '/reference.html'
-	],
-	['menu_grp6', null, null,
-		['Conditions and Limitation', '/conditionsofUse.html'],
-		['Data Sharing Policy', '/dataSharing.html'],
-		['Status and Contacts', '/statusandContact.html'],
-		['Privacy Policy', '/privacy.html'],
-	],
-	['menu_grp8', '/links.html'
-	],
-];