Add all the source codes into the github.

1 files changed, 109 insertions, 0 deletions

diff --git a/web/javascript/menu_items.js b/web/javascript/menu_items.js
new file mode 100755
index 00000000..9c3eee4b
--- /dev/null
+++ b/web/javascript/menu_items.js
@@ -0,0 +1,109 @@
+/*
+  --- menu items --- 
+  note that this structure has changed its format since previous version.
+  additional third parameter is added for item scope settings.
+  Now this structure is compatible with Tigra Menu GOLD.
+  Format description can be found in product documentation.
+*/
+var MENU_ITEMS = [
+	['menu_grp1', null, null,
+		['GeneNetwork Intro', '/home.html'],
+		['Enter Trait Data', '/webqtl/main.py?FormID=submitSingleTrait'],
+		['Batch Submission', '/webqtl/main.py?FormID=batSubmit'],
+	],
+	['menu_grp2', null, null,
+		['Search Databases', '/'],
+		['Tissue Correlation', '/webqtl/main.py?FormID=tissueCorrelation'],
+		['SNP Browser', '/webqtl/main.py?FormID=snpBrowser'],
+		['Gene Wiki', '/webqtl/main.py?FormID=geneWiki'],
+		['Interval Analyst', '/webqtl/main.py?FormID=intervalAnalyst'],
+		['QTLminer', '/webqtl/main.py?FormID=qtlminer'],
+		['GenomeGraph', '/dbResults.html'],
+		['Trait Collections',null,null,
+['Human', null, null, 
+	['CEPH-2004', '/webqtl/main.py?FormID=dispSelection&RISet=CEPH-2004'], 
+	['AD-cases-controls', '/webqtl/main.py?FormID=dispSelection&RISet=AD-cases-controls'], 
+	['AD-cases-controls-Myers', '/webqtl/main.py?FormID=dispSelection&RISet=AD-cases-controls-Myers'], 
+	['CEPH-2009', '/webqtl/main.py?FormID=dispSelection&RISet=CEPH-2009'], 
+	['HLC', '/webqtl/main.py?FormID=dispSelection&RISet=HLC'], 
+	['CANDLE', '/webqtl/main.py?FormID=dispSelection&RISet=CANDLE'], 
+	['HB', '/webqtl/main.py?FormID=dispSelection&RISet=HB'], 
+	['HSB', '/webqtl/main.py?FormID=dispSelection&RISet=HSB'], 
+],
+['Macaque monkey', null, null, 
+	['Macaca-fasicularis', '/webqtl/main.py?FormID=dispSelection&RISet=Macaca-fasicularis'], 
+],
+['Mouse', null, null, 
+	['BXD', '/webqtl/main.py?FormID=dispSelection&RISet=BXD'], 
+	['B6D2F2', '/webqtl/main.py?FormID=dispSelection&RISet=B6D2F2'], 
+	['AXBXA', '/webqtl/main.py?FormID=dispSelection&RISet=AXBXA'], 
+	['AKXD', '/webqtl/main.py?FormID=dispSelection&RISet=AKXD'], 
+	['B6BTBRF2', '/webqtl/main.py?FormID=dispSelection&RISet=B6BTBRF2'], 
+	['BXH', '/webqtl/main.py?FormID=dispSelection&RISet=BXH'], 
+	['CXB', '/webqtl/main.py?FormID=dispSelection&RISet=CXB'], 
+	['LXS', '/webqtl/main.py?FormID=dispSelection&RISet=LXS'], 
+	['BDF2-2005', '/webqtl/main.py?FormID=dispSelection&RISet=BDF2-2005'], 
+	['MDP', '/webqtl/main.py?FormID=dispSelection&RISet=MDP'], 
+	['NZBXFVB-N2', '/webqtl/main.py?FormID=dispSelection&RISet=NZBXFVB-N2'], 
+	['BHF2', '/webqtl/main.py?FormID=dispSelection&RISet=BHF2'], 
+	['BDF2-1999', '/webqtl/main.py?FormID=dispSelection&RISet=BDF2-1999'], 
+	['CTB6F2', '/webqtl/main.py?FormID=dispSelection&RISet=CTB6F2'], 
+	['BHHBF2', '/webqtl/main.py?FormID=dispSelection&RISet=BHHBF2'], 
+	['HS', '/webqtl/main.py?FormID=dispSelection&RISet=HS'], 
+	['HS-CC', '/webqtl/main.py?FormID=dispSelection&RISet=HS-CC'], 
+],
+['Rat', null, null, 
+	['HXBBXH', '/webqtl/main.py?FormID=dispSelection&RISet=HXBBXH'], 
+	['SRxSHRSPF2', '/webqtl/main.py?FormID=dispSelection&RISet=SRxSHRSPF2'], 
+],
+['Drosophila', null, null, 
+	['Oregon-R_x_2b3', '/webqtl/main.py?FormID=dispSelection&RISet=Oregon-R_x_2b3'], 
+	['DGRP', '/webqtl/main.py?FormID=dispSelection&RISet=DGRP'], 
+],
+['Arabidopsis thaliana', null, null, 
+	['BayXSha', '/webqtl/main.py?FormID=dispSelection&RISet=BayXSha'], 
+	['ColXCvi', '/webqtl/main.py?FormID=dispSelection&RISet=ColXCvi'], 
+	['ColXBur', '/webqtl/main.py?FormID=dispSelection&RISet=ColXBur'], 
+],
+['Barley', null, null, 
+	['SXM', '/webqtl/main.py?FormID=dispSelection&RISet=SXM'], 
+	['QSM', '/webqtl/main.py?FormID=dispSelection&RISet=QSM'], 
+],
+['Soybean', null, null, 
+	['J12XJ58F2', '/webqtl/main.py?FormID=dispSelection&RISet=J12XJ58F2'], 
+],
+['Tomato', null, null, 
+	['LXP', '/webqtl/main.py?FormID=dispSelection&RISet=LXP'], 
+],
+		],
+		['Scriptable Interface', '/CGIDoc.html'],
+		/* ['Simple Query Interface', '/GUI.html'], */
+		['Database Information',null,null,
+			['Database Schema', '/webqtl/main.py?FormID=schemaShowPage'],
+		],
+		['Data Sharing', '/webqtl/main.py?FormID=sharing'],
+		['Microarray Annotations', '/webqtl/main.py?FormID=annotation'],
+	],
+	['menu_grp3', null, null,
+		['Movies','http://www.genenetwork.org/tutorial/movies'],
+		['Tutorials', null, null, 
+                ['GN Barley Tutorial','/tutorial/pdf/GN_Barley_Tutorial.pdf'],
+                ['GN Powerpoint', '/tutorial/ppt/index.html']],
+		['HTML Tour','/tutorial/WebQTLTour/'],
+		['FAQ','/faq.html'],
+		['Glossary of Terms','/glossary.html'],
+		['GN MediaWiki','http://wiki.genenetwork.org/'],
+	],
+	['menu_grp4', '/whats_new.html'
+	],
+	['menu_grp5', '/reference.html'
+	],
+	['menu_grp6', null, null,
+		['Conditions and Limitation', '/conditionsofUse.html'],
+		['Data Sharing Policy', '/dataSharing.html'],
+		['Status and Contacts', '/statusandContact.html'],
+		['Privacy Policy', '/privacy.html'],
+	],
+	['menu_grp8', '/links.html'
+	],
+];