Add all the source codes into the github.

1 files changed, 319 insertions, 0 deletions

diff --git a/web/javascript/dhtml.js b/web/javascript/dhtml.js
new file mode 100755
index 00000000..52676ac8
--- /dev/null
+++ b/web/javascript/dhtml.js
@@ -0,0 +1,319 @@
+/**
+ * These are REALLY simple serialisation tools meant for simple Hash-like
+objects in the for key=val
+ */
+var PrefUtils = {
+  deserialize:function(inStr){
+    return eval('('+inStr+')');
+  },
+  serialize:function(inObj){
+    var buf = '{';
+    var cma = '';
+    var quote = "'";
+    for (i in inObj){
+      if (typeof i == 'string'){
+        buf += cma + quote + i + quote + " : " 
+          + quote +inObj[i]+ quote;
+          cma = ',';
+      }
+    }
+    buf += '}';
+    return buf;
+  },
+  testCookie:function(){
+    setCookie('cookieTest', 'cookieTest', 1);
+    var cookieTest = getCookie('cookieTest');
+    delCookie('cookieTest');
+    if (cookieTest) return true;
+    else return false;
+  },
+  form2Cookie:function(thisForm, cookieName){
+    if (!this.testCookie()){
+      alert("You need to enable Cookie in your browser!");
+    }
+    else{
+      var pref = getCookie(cookieName);
+      var options = this.deserialize(pref);
+      if(!options){
+  	  options = new Array();
+      }/**/
+      for( var x = 0; thisForm.elements[x]; x++ ) {
+  	  if( thisForm.elements[x].type ) {
+  	    var oE = thisForm.elements[x]; 
+  	    var oT = oE.type.toLowerCase();
+  	    if( oT == 'text' || oT == 'textarea' || oT == 'select-one' ) {
+  	      options[oE.name] = oE.value;
+  	    }
+        }
+      }
+      setCookie(cookieName, this.serialize(options), 10);
+      alert("Your preference has been saved.");
+    }	
+  }
+};
+
+function updateInner(Id, str){
+  document.getElementById(Id).innerHTML = str;
+}
+
+
+function popWindow(myId){
+	if (!document.getElementById || !myId) return false;
+	else{
+		var div = document.getElementById(myId);
+		if (!div){
+			div = document.createElement("div");
+			div.id = myId;
+			div.style.position = "absolute";
+			div.style.top = "50%";
+			div.style.left = "50%";
+			div.style.width = "400px";
+			div.style.height = "250px";
+			div.style.margin = "-125px 0 0 -200px";
+			div.style.border = "4px double #3366cc";
+			div.style.padding = "0px";
+			div.style.opacity = "0.99";
+			div.style.backgroundColor = "#FFFFFF";
+			div.style.fontSize = "60px";
+			div.style.lineHeight = "60px";
+			div.style.textAlign = "right";
+			document.body.appendChild(div);
+		}
+		else{
+			//alert("Layer already exists;")
+		}
+		xmlhttpPost('/webqtl/AJAX_pref.py', 'tab=assembly&divId='+myId, myId);
+		div.style.visibility = 'visible';
+	}
+}
+
+/*New added by NL*/
+/*
+Used by PartialCorrTraitPage.py, CorrelationPage.py, 
+*/
+function xmlhttpPost(strURL, div, querystring) {
+	
+    var xmlHttpReq = false;
+    var self = this;
+    var lay  = document.getElementById('warningLayer');
+    if (lay != null) {lay.style.visibility = "visible";}
+    // Mozilla/Safari
+    if (window.XMLHttpRequest) {
+        self.xmlHttpReq = new XMLHttpRequest();
+    }
+    // IE
+    else if (window.ActiveXObject) {
+        self.xmlHttpReq = new ActiveXObject("Microsoft.XMLHTTP");
+    }
+    self.xmlHttpReq.open('POST', strURL, true);
+    self.xmlHttpReq.setRequestHeader('Content-Type', 'application/x-www-form-urlencoded');
+    self.xmlHttpReq.onreadystatechange = function() {
+        if (self.xmlHttpReq.readyState == 4) {
+                responseText = self.xmlHttpReq.responseText;
+            updatepage(div, responseText);
+            if (lay != null) lay.style.visibility = "hidden";
+        }
+    }
+    self.xmlHttpReq.send(querystring);
+}
+
+function updatepage(Id, str){
+        document.getElementById(Id).innerHTML = str;
+}
+/*
+Used by CorrelationPage.py,
+elements: name,customizer, trait, filename, strainIds and vals are required by getquerystring function
+*/
+function getquerystring(thisform) {
+    var db = thisform.customizer.value;
+    var dbname = thisform.databaseFull.value;
+    var form = thisform.name;
+    var trait = thisform.identification.value;
+    var file = thisform.filename.value;
+    var ids = thisform.strainIds.value;
+    var vals = thisform.vals.value;
+    qstr = 'cmd=addCorr&db=' + escape(db) + '&dbname=' + escape(dbname) + '&form=' + escape(form) + '&trait=' + escape(trait) + '&file=' + escape(file)+ '&ids=' + escape(ids) + '&vals=' + escape(vals);  
+        // NOTE: no '?' before querystring
+    return qstr;
+}
+
+/*
+* Used by snpBrowserPage.py and AJAX_snpbrowser.py, 
+*/
+function xmlhttpPostSNP(strURL) {
+    var xmlHttpReq = false;
+    var self = this;
+    // Mozilla/Safari
+    if (window.XMLHttpRequest) {
+        self.xmlHttpReq = new XMLHttpRequest();
+    }
+    // IE
+    else if (window.ActiveXObject) {
+        self.xmlHttpReq = new ActiveXObject("Microsoft.XMLHTTP");
+    }
+    self.xmlHttpReq.open('POST', strURL, true);
+    self.xmlHttpReq.setRequestHeader('Content-Type', 'application/x-www-form-urlencoded');
+    self.xmlHttpReq.onreadystatechange = function() {
+        if (self.xmlHttpReq.readyState == 4) {
+        	responseTextArray = self.xmlHttpReq.responseText.split("__split__");
+            updatepage('menu_group', responseTextArray[0]);
+            updatepage('menu_s1', responseTextArray[1]);
+            updatepage('menu_s2', responseTextArray[2]);
+            updatepage('menu_s3', responseTextArray[3]);
+        }
+    }    
+    self.xmlHttpReq.send(getquerystringSNP());  
+}
+/*
+* used by snpBrowserPage.py, html elements:newSNPPadding, group, s1 and s2 are required
+*/
+function getquerystringSNP() {
+    var form = document.newSNPPadding;
+    var group = form.group.value;
+    var s1 = form.s1.value;
+    var s2 = form.s2.value;
+    qstr = 'group=' + escape(group) + '&s1=' + escape(s1) + '&s2=' + escape(s2);  
+    	// NOTE: no '?' before querystring
+    return qstr;
+}
+
+
+/*
+Used by CorrelationPage.py, element's Id named 'warningLayer' is required
+*/
+function pageOffset() {
+    lay  = document.getElementById('warningLayer');
+    lay.style.top = document.body.scrollTop + 300; //document.body.clientWidth/2;
+    lay.style.left = (windowWidth() -250)/2;
+    setTimeout('pageOffset()',100);
+}
+
+/*
+* Used by CorrelationPage.py, 
+*/
+function windowWidth(){
+   if (document.getElementById){
+
+       if (window.innerWidth)
+         return window.innerWidth;
+       if (document.documentElement&&document.documentElement.clientWidth)
+         return document.documentElement.clientWidth;
+       if (document.body.clientWidth)
+         return document.body.clientWidth;
+   }
+}
+
+/*
+* Used by PartialCorrInputPage.py, 
+*/
+function setAllAsTarget(thisForm, inputRadioNames){
+    var radioArray = new Array();
+    radioArray = inputRadioNames.split(',');
+
+        for (var i = 0; i < radioArray.length; i++){
+	    radioElement = thisForm[radioArray[i]];
+		
+        for (var j = 0; j < radioElement.length; j++){
+            radioElement[j].checked = false;
+            value = radioElement[j].value;
+            if (value == "target"){
+                    radioElement[j].checked = true;
+                }
+        }
+	}
+}
+
+/*
+* Used by PartialCorrInputPage.py, 
+*/
+function setAllAsIgnore(thisForm, inputRadioNames){
+    var radioArray = new Array();
+    radioArray = inputRadioNames.split(',');
+
+        for (var i = 0; i < radioArray.length; i++){
+	    radioElement = thisForm[radioArray[i]];
+		
+	    for (var j = 0; j < radioElement.length; j++){
+		    radioElement[j].checked = false;
+		    value = radioElement[j].value;
+	        if (value == "ignored"){
+                    radioElement[j].checked = true;
+                }
+	    }
+	}
+}
+
+/*
+* moved from beta2.js 
+*/
+function checkUncheck(value, permCheck, bootCheck) {
+		 if(value=="physic") {
+			  permCheck.checked=true
+			  bootCheck.checked=false
+	 } else {
+		  permCheck.checked=true
+			  bootCheck.checked=true
+		 }
+}
+
+/*
+updated by NL: 06-07-2010
+add new item at the top
+*/
+function addToList(text, value, list) {
+	for (var j = list.length-1; j >=0; j--){
+		list.options[j+1]= new Option(list.options[j].text,list.options[j].value);
+	}
+	list.options[0] = new Option(text, value)
+}
+
+function removeFromList(index, list) {
+	list.options[index] = null
+	list.options[index].selected = true
+	if (list.length == 1) {
+		list.options[0].selected = true
+	}
+}
+
+function swapOptions(index1, index2, list) {
+	 text1 = list.options[index1].text
+	 value1 = list.options[index1].value
+	 text2 = list.options[index2].text
+	 value2 = list.options[index2].value
+	 list.options[index1] = new Option(text2, value2)
+	 list.options[index2] = new Option(text1, value1)
+	 list.options[index2].selected = true
+}
+
+function selectAllElements(list) {
+	 for(i=0; i<list.length; i++) {
+		  list.options[i].selected = true
+	 }
+}
+
+function deleteAllElements(list) {
+	 list.length=0
+}
+
+function formInNewWindow(thisform) {
+	 var d = new Date()
+	 winName = "Intvl"+d.getDate()+""+d.getMonth()+""+d.getHours()+""+d.getMinutes()+""+d.getSeconds();
+	 win = window.open("", winName, "toolbar=yes,location=yes,directories=yes,status=yes,menubar=yes,scrollbars=yes,copyhistory=yes,resizable=yes");
+	 thisform.target = winName;
+	 thisform.submit();
+}
+
+/*
+* moved from whats_new.html 
+*/
+function colapse(id)
+{
+    if( document.getElementById(id).style.display =='none')
+    {
+        document.getElementById(id).style.display ='';
+    }
+    else if( document.getElementById(id).style.display =='')
+    {
+        document.getElementById(id).style.display ='none';
+    }
+}