diff options
| author | Zachary Sloan | 2014-06-06 22:00:30 +0000 |
|---|---|---|
| committer | Zachary Sloan | 2014-06-06 22:00:30 +0000 |
| commit | 0bdeca3490c1ddbb7fa29165893a97f90eeefba7 (patch) | |
| tree | 3ea8786848218f459fd8101f6b49a1b7587e08fc /web/gemma/output/HLC_output.log.txt | |
| parent | 515662ecabd5d3a90eef6987aa5f8d4dbe63611f (diff) | |
| download | genenetwork2-0bdeca3490c1ddbb7fa29165893a97f90eeefba7.tar.gz | |
Implimented Karl Broman's lodchart code for the interval mapping function.
Suggestive/significant bars and additive effect curve added
Diffstat (limited to 'web/gemma/output/HLC_output.log.txt')
| -rw-r--r-- | web/gemma/output/HLC_output.log.txt | 24 |
1 files changed, 12 insertions, 12 deletions
diff --git a/web/gemma/output/HLC_output.log.txt b/web/gemma/output/HLC_output.log.txt index e8107112..f7c9f5d2 100644 --- a/web/gemma/output/HLC_output.log.txt +++ b/web/gemma/output/HLC_output.log.txt @@ -10,19 +10,19 @@ ## number of phenotypes = 1 ## number of total SNPs = 358499 ## number of analyzed SNPs = 273349 -## REMLE log-likelihood in the null model = -4252.51 -## MLE log-likelihood in the null model = -4261.76 -## pve estimate in the null model = 0.314624 -## se(pve) in the null model = 0.403683 -## vg estimate in the null model = 2.61389e+07 -## ve estimate in the null model = 1.88332e+07 -## beta estimate in the null model = 5107.48 -## se(beta) = 210.014 +## REMLE log-likelihood in the null model = -3351.61 +## MLE log-likelihood in the null model = -3357.96 +## pve estimate in the null model = 0.858988 +## se(pve) in the null model = 0.0889649 +## vg estimate in the null model = 1.0633e+06 +## ve estimate in the null model = 57733.1 +## beta estimate in the null model = 620.978 +## se(beta) = 11.6278 ## ## Computation Time: -## total computation time = 2.5965 min +## total computation time = 2.67033 min ## computation time break down: -## time on eigen-decomposition = 0.0015 min -## time on calculating UtX = 0.414167 min -## time on optimization = 2.03267 min +## time on eigen-decomposition = 0.00183333 min +## time on calculating UtX = 0.399833 min +## time on optimization = 2.12417 min ## |