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| author | Zachary Sloan | 2014-05-05 17:09:24 +0000 |
|---|---|---|
| committer | Zachary Sloan | 2014-05-05 17:09:24 +0000 |
| commit | 759a7a23b0ea848b8c8ffe2804841322254d8696 (patch) | |
| tree | f2994e8228c96cb8dbf39e69a34dedf65acc6f14 /web/gemma/output/HLC_output.log.txt | |
| parent | d2454fe1306b298d5b7a4dd349a4f26ebc7307a2 (diff) | |
| download | genenetwork2-759a7a23b0ea848b8c8ffe2804841322254d8696.tar.gz | |
Committing a bunch of changes related to integrating GEMMA and
adding the correlation matrix page
Diffstat (limited to 'web/gemma/output/HLC_output.log.txt')
| -rw-r--r-- | web/gemma/output/HLC_output.log.txt | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/web/gemma/output/HLC_output.log.txt b/web/gemma/output/HLC_output.log.txt new file mode 100644 index 00000000..9dd3d75b --- /dev/null +++ b/web/gemma/output/HLC_output.log.txt @@ -0,0 +1,28 @@ +## +## GEMMA Version = 0.94 +## +## Command Line Input = -bfile HLC -k output_HLC.cXX.txt -lmm 1 -o HLC_output +## +## Summary Statistics: +## number of total individuals = 427 +## number of analyzed individuals = 427 +## number of covariates = 1 +## number of phenotypes = 1 +## number of total SNPs = 358499 +## number of analyzed SNPs = 273349 +## REMLE log-likelihood in the null model = -3121.45 +## MLE log-likelihood in the null model = -3127.35 +## pve estimate in the null model = 0.830303 +## se(pve) in the null model = 0.108674 +## vg estimate in the null model = 347865 +## ve estimate in the null model = 23515.2 +## beta estimate in the null model = 454.076 +## se(beta) = 7.42097 +## +## Computation Time: +## total computation time = 2.67 min +## computation time break down: +## time on eigen-decomposition = 0.0015 min +## time on calculating UtX = 0.4125 min +## time on optimization = 2.10517 min +## |