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authorzsloan2015-03-27 20:28:51 +0000
committerzsloan2015-03-27 20:28:51 +0000
commitd0911a04958a04042da02a334ccc528dae79cc17 (patch)
tree3c48e2e937c1dbeaf00a5697c87ed251afa5c8f1 /web/dbdoc/Hipp_M430.RO_0706.html
parenta840ad18e1fe3db98a359a159e9b9b72367a2839 (diff)
downloadgenenetwork2-d0911a04958a04042da02a334ccc528dae79cc17.tar.gz
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-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-<HTML><HEAD><TITLE>Hippocampus M430.RO (Oct06) Metadata</TITLE>
-<META http-equiv=Content-Type content="text/html; charset=iso-8859-1">
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- <P class="title">Hippocampus M430 R. Overall Data Set<A HREF="/webqtl/main.py?FormID=editHtml">
- <img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A></P>
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-<P>Experimental transform of Hippocampus Consortium data set using a new Cell Definition File generated by Dr. Fan Meng at University of Michigan (see http://brainarray.mbni.med.umich.edu/Brainarray/Aboutus/Aboutus.asp). Implementation by Rupert Overall (Max-Delbruck-Centrum, Berlin).
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-<P>The ID is the Entrez GeneID. Rupert Overal retransformed the CEL files with the affy.rma package in R using a new CDF file (Mm430_Mm_ENTREZG_8 from the website of Dr. Meng's group in Michigan "<http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp>http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp").
-This bundles together probes belonging to the same Entrez Gene accession together. The raw output of this transform is, in fact, the GeneID with a trailing "_at" which we have removed to simplify translation into Gene Symbols.
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- new menu (MENU_ITEMS, MENU_POS);
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