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authorzsloan2016-06-20 16:01:12 +0000
committerzsloan2016-06-20 16:01:12 +0000
commit30a37c6f1f9a9f759a92fd61876af9e9e3d078b9 (patch)
treee4f5b49aa21c32aa2b770b1a65c8fef7782b625f /test
parent4fec0e6fc0772785a30451d417082bc189f2f6dd (diff)
parent10df36b60273d81678f6630c07a2d8e5a6409282 (diff)
downloadgenenetwork2-30a37c6f1f9a9f759a92fd61876af9e9e3d078b9.tar.gz
Merge branch 'staging' of github.com:genenetwork/genenetwork2 into development
Diffstat (limited to 'test')
-rw-r--r--test/lib/link_checker.rb2
-rw-r--r--test/lib/main_web_functionality.rb19
-rw-r--r--test/lib/navigation.rb (renamed from test/lib/NavigationTest.rb)17
3 files changed, 23 insertions, 15 deletions
diff --git a/test/lib/link_checker.rb b/test/lib/link_checker.rb
index fb201887..15449144 100644
--- a/test/lib/link_checker.rb
+++ b/test/lib/link_checker.rb
@@ -24,7 +24,7 @@ describe LinkChecker do
describe LinkChecker do
it "Get to trait page" do
page = @agent.get($host+'/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P')
- p page
+ # p page
# Get to trait page for 1435395_s_at
# form2 = show_trait_page.forms_with("trait_page")[0]
diff --git a/test/lib/main_web_functionality.rb b/test/lib/main_web_functionality.rb
index d0a32835..ec61de2d 100644
--- a/test/lib/main_web_functionality.rb
+++ b/test/lib/main_web_functionality.rb
@@ -10,10 +10,11 @@ describe MainWebFunctionality do
end
describe MainWebFunctionality do
+
it "Get to trait page" do
page = @agent.get($host)
form = page.forms[1]
- form.buttons[0].value.must_equal "Search"
+ form.buttons[0].value.must_equal "Search" # main menu is loaded
# http://localhost:5003/search?species=mouse&group=BXD&type=Hippocampus+mRNA&dataset=HC_M2_0606_P&search_terms_or=&search_terms_and=MEAN%3D%2815+16%29+LRS%3D%2823+46%29&FormID=searchResult
form.fields[2].value = "MEAN=(15 16) LRS=(23 46)"
@@ -25,19 +26,27 @@ describe MainWebFunctionality do
probe_link = search_page.links.find { |l| l.text =~ /1435395_s_at/ }
probe_link.uri.to_s.must_equal "/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P"
show_trait_page = probe_link.click
- p show_trait_page
+ # p show_trait_page
# Get to trait page for 1435395_s_at
+
form2 = show_trait_page.forms_with("trait_page")[0]
- form2.fields[30].name.must_equal "variance:C57BL/6J"
+ # [name: corr_dataset value: HC_M2_0606_P]
+ form2.fields.select { |fld| fld.name == 'corr_dataset' }.first.value.must_equal 'HC_M2_0606_P'
+ if $options[:database] == :small
+ form2.fields[30].name.must_equal "value:DBA/2J"
+ else
+ form2.fields[30].name.must_equal "variance:C57BL/6J"
+ end
# form2.fields[30].value.must_equal "15.287"
# Test every link on the page to check if it's broken or not
+ break if not $options[:link_checker]
show_trait_page.links.each do |link|
puts link.href
if link.href !~ /static\/dbdoc\/Hippocampus/ and link.href !~ /glossary.html|sample_r|grits.eecs.utk.edu|correlationAnnotation.html/
- # Fetch link, program will crash with exception if link is broken
- linkpage = @agent.get(link.href)
+ # Fetch link, program will crash with exception if link is broken
+ linkpage = @agent.get(link.href)
puts "Link to #{link.href} is valid, response code #{linkpage.code}"
end
end
diff --git a/test/lib/NavigationTest.rb b/test/lib/navigation.rb
index 26080d28..676ee90c 100644
--- a/test/lib/NavigationTest.rb
+++ b/test/lib/navigation.rb
@@ -1,5 +1,6 @@
# In these tests we navigate from the main page to a specific trait then hit the different mapping tool buttons (In this case pylMM and r/qtl) followed by computing the results (marker regressions).
+
class NavigationTest
end
@@ -11,6 +12,7 @@ describe NavigationTest do
describe NavigationTest do
it "pyLMM mapping tool selection" do
+ break if $options[:skip_broken]
page = @agent.get($host+'/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P')
#Navigates to http://localhost:5003/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P and clicks respective buttons.
link = page.link_with(text: 'pyLMM')
@@ -20,15 +22,14 @@ describe NavigationTest do
page = link.click
puts page.uri
probe_link.uri.to_s.must_equal "/marker_regression"
-
-
- end
- end
+ end
+ end
end
describe NavigationTest do
it "R/qtl mapping tool selection" do
+ break if $options[:skip_broken]
page = @agent.get($host+'/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P')
link = page.link_with(text: 'R/qtl')
page = link.click
@@ -37,10 +38,8 @@ describe NavigationTest do
link = page.link_with(text: 'Compute')
page = link.click
puts page.uri
- probe_link.uri.to_s.must_equal "/marker_regression"
-
-
- end
- end
+ probe_link.uri.to_s.must_equal "/marker_regression"
+ end
+end