Merge pull request #297 from pjotrp/testing

Testing

1 files changed, 43 insertions, 0 deletions

diff --git a/test/requests/mapping_tests.py b/test/requests/mapping_tests.py
new file mode 100644
index 00000000..fd20df11
--- /dev/null
+++ b/test/requests/mapping_tests.py
@@ -0,0 +1,43 @@
+from __future__ import print_function
+import re
+import json
+import requests
+from lxml.html import fromstring
+
+def get_data(list_item):
+    try:
+        value = list_item[1]
+    except:
+        value = None
+    #print("list_item:", list_item, "==>", value)
+    return value
+
+def load_data_from_file():
+    filename = "../test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json"
+    file_handle = open(filename, "r")
+    file_data = json.loads(file_handle.read().encode("utf-8"))
+    return file_data
+
+def check_pylmm_tool_selection(host, data):
+    data["method"] = "pylmm"
+    page = requests.post(host+"/marker_regression", data=data)
+    doc = fromstring(page.text)
+    form = doc.forms[1]
+    assert form.fields["dataset"] == "HC_M2_0606_P"
+    assert form.fields["value:BXD1"] == "15.034" # Check value in the file
+
+def check_R_qtl_tool_selection(host, data):
+    pass
+
+def check_CIM_tool_selection(host, data):
+    pass
+
+def check_mapping(args_obj, parser):
+    print("")
+    print("Checking mapping")
+
+    host = args_obj.host
+    data = load_data_from_file()
+    check_pylmm_tool_selection(host, data)
+    check_R_qtl_tool_selection(host, data)
+    check_CIM_tool_selection(host, data)