Merge pull request #1 from genenetwork/testing

Updating my testing branch

1 files changed, 42 insertions, 0 deletions

diff --git a/test/requests/mapping_tests.py b/test/requests/mapping_tests.py
new file mode 100644
index 00000000..6de81bfe
--- /dev/null
+++ b/test/requests/mapping_tests.py
@@ -0,0 +1,42 @@
+from __future__ import print_function
+import re
+import copy
+import json
+import requests
+from lxml.html import fromstring
+
+def load_data_from_file():
+    filename = "../test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json"
+    file_handle = open(filename, "r")
+    file_data = json.loads(file_handle.read().encode("utf-8"))
+    return file_data
+
+def check_R_qtl_tool_selection(host, data):
+    print("")
+    print("R/qtl mapping tool selection")
+    headers = {"Content-Type": "application/x-www-form-urlencoded"}
+    page = requests.post(host+"/marker_regression", data=data, headers=headers)
+    doc = fromstring(page.text)
+    form = doc.forms[1]
+    assert form.fields["dataset"] == "HC_M2_0606_P"
+    assert form.fields["value:BXD1"] == "15.034"
+
+def check_CIM_tool_selection(host, data):
+    print("")
+    print("CIM mapping tool selection (using reaper)")
+    data["method"] = "reaper"
+    page = requests.post(host+"/marker_regression", data=data)
+    doc = fromstring(page.text)
+    form = doc.forms[1]
+    assert form.fields["dataset"] == "HC_M2_0606_P"
+    assert form.fields["value:BXD1"] == "15.034"
+
+def check_mapping(args_obj, parser):
+    print("")
+    print("Checking mapping")
+
+    host = args_obj.host
+    data = load_data_from_file()
+    check_pylmm_tool_selection(host, copy.deepcopy(data))
+    check_R_qtl_tool_selection(host, copy.deepcopy(data)) ## Why does this fail?
+    check_CIM_tool_selection(host, copy.deepcopy(data))