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authorzsloan2016-10-03 19:20:21 +0000
committerzsloan2016-10-03 19:20:21 +0000
commitdb0633155b88667e3c6ea760e0637ff1308d34e0 (patch)
tree9a2d3c677bee40b9d428092727ad0e5e9842d912 /test/lib/mapping.rb
parent6a0a3626baad96deb1e8dc7d27fe1fa15e8c5b98 (diff)
parent2115fcfde74375252f556153d48f52f4d15fb298 (diff)
downloadgenenetwork2-db0633155b88667e3c6ea760e0637ff1308d34e0.tar.gz
Merge branch 'master' of github.com:genenetwork/genenetwork2
Diffstat (limited to 'test/lib/mapping.rb')
-rw-r--r--test/lib/mapping.rb70
1 files changed, 38 insertions, 32 deletions
diff --git a/test/lib/mapping.rb b/test/lib/mapping.rb
index 08b6b5da..4c8ff632 100644
--- a/test/lib/mapping.rb
+++ b/test/lib/mapping.rb
@@ -1,5 +1,6 @@
# In these tests we navigate from the main page to a specific trait then hit the different mapping tool buttons (In this case pylMM and r/qtl) followed by computing the results (marker regressions).
+require 'gntest'
class MappingTest
end
@@ -11,41 +12,46 @@ describe MappingTest do
end
describe MappingTest do
- it "pyLMM mapping tool selection" do
- url = $host+'/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P'
- page = @agent.get(url)
- # get the form
- # form = @agent.page.form_with(:name => "my-form")
- # get the button you want from the form
- # page.forms.each do |form|
- # p form
- # end
- # button = page.button_with(:value => "pylmm_compute")
- # submit the form using that button
- # agent.submit(form, button)
- # link = page.link_with(text: 'pyLMM')
- # page = link.click
- # puts page.uri
- # link = page.link_with(text: 'Compute')
- # page = link.click
- # puts page.uri
- # probe_link.uri.to_s.must_equal "/marker_regression"
+ it "pylmm mapping tool selection" do
+ url = $host+'/marker_regression'
+
+ json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
+ json["method"] = "pylmm"
+ # p json
+ page = @agent.post(URI.encode(url), json)
+ # Unpacking the page is slow - but the run is enough as a test
+ # form = page.forms_with("marker_regression")[0]
+ # form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
+ # form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal '6.749'
end
end
-end
-
-describe MappingTest do
+ describe MappingTest do
it "R/qtl mapping tool selection" do
- break if $options[:skip_broken]
- page = @agent.get($host+'/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P')
- link = page.link_with(text: 'R/qtl')
- page = link.click
- puts page.uri
- form.field_with(:name => 'Methods').options[2].select
- link = page.link_with(text: 'Compute')
- page = link.click
- puts page.uri
- probe_link.uri.to_s.must_equal "/marker_regression"
+ url = $host+'/marker_regression' # ?trait_id=1435395_s_at&dataset=HC_M2_0606_P'
+
+ json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
+ # p json
+ page = @agent.post(URI.encode(url),
+ json,
+ ({'Content-Type' => 'application/x-www-form-urlencoded'}))
+ form = page.forms_with("marker_regression")[0]
+ form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
+ form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal '6.749'
end
+ end
+
+ describe MappingTest do
+ it "CIM mapping tool selection (using reaper)" do
+ url = $host+'/marker_regression'
+
+ json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
+ json["method"] = "reaper"
+ page = @agent.post(URI.encode(url), json)
+ form = page.forms_with("marker_regression")[0]
+ form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
+ form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal '6.749'
+ end
+ end
+
end