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authoracenteno2020-04-21 17:35:34 -0500
committerGitHub2020-04-21 17:35:34 -0500
commit660589b9c2a507529e8e51ca6ce66ca97ad982c5 (patch)
tree27f63957278581bc2fce2b88744bfe20c8a81558 /test/lib/mapping.rb
parentd97fdc18359233f07c1a1c7b83fe7e88eb225043 (diff)
parentf2a3ae13231a7d270a5bb6911c248aa713f1ef91 (diff)
downloadgenenetwork2-660589b9c2a507529e8e51ca6ce66ca97ad982c5.tar.gz
Merge pull request #1 from genenetwork/testing
Updating my testing branch
Diffstat (limited to 'test/lib/mapping.rb')
-rw-r--r--test/lib/mapping.rb58
1 files changed, 0 insertions, 58 deletions
diff --git a/test/lib/mapping.rb b/test/lib/mapping.rb
deleted file mode 100644
index 20e5bd40..00000000
--- a/test/lib/mapping.rb
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@@ -1,58 +0,0 @@
-# In these tests we navigate from the main page to a specific trait then hit the different mapping tool buttons (In this case pylMM and r/qtl) followed by computing the results (marker regressions).
-
-require 'gntest'
-
-class MappingTest
-end
-
-describe MappingTest do
-  before do
-    @agent = Mechanize.new
-    @agent.agent.http.ca_file = '/etc/ssl/certs/ca-certificates.crt'
-  end
-
-  describe MappingTest do
-    it "pylmm mapping tool selection" do
-      url = $host+'/marker_regression'
-
-      json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
-      json["method"] = "pylmm"
-      # p json
-      page = @agent.post(URI.encode(url), json)
-      # Unpacking the page is slow - somehow - but the run is enough as a test
-      # form = page.forms_with("marker_regression")[0]
-      # form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
-      # form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal '6.749'
-    end
-  end
-
-  describe MappingTest do
-    it "R/qtl mapping tool selection" do
-      url = $host+'/marker_regression' # ?trait_id=1435395_s_at&dataset=HC_M2_0606_P'
-
-      json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
-      # p json
-      page = @agent.post(URI.encode(url),
-                         json,
-                         ({'Content-Type' => 'application/x-www-form-urlencoded'}))
-      form = page.forms_with("marker_regression")[0]
-      p form
-      form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
-      form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal "15.034"
-    end
-  end
-
-  describe MappingTest do
-    it "CIM mapping tool selection (using reaper)" do
-      url = $host+'/marker_regression'
-
-      json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
-      json["method"] = "reaper"
-      page = @agent.post(URI.encode(url), json)
-      form = page.forms_with("marker_regression")[0]
-      form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
-      form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal "15.034"
-    end
-  end
-
-end