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author | Muriithi Frederick Muriuki | 2018-04-05 09:35:41 +0300 |
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committer | Muriithi Frederick Muriuki | 2018-04-05 09:35:41 +0300 |
commit | 90c367b206a846a08ce4bb06eeed7be31fe1c367 (patch) | |
tree | fe47ef5f4158494d49fdbca5a85c3985b37bed7c /test/lib/mapping.rb | |
parent | 31747256e466456cc88aac60780836a6534f18cd (diff) | |
parent | b152aca03be73655d2fb5eda17d533504ed900e2 (diff) | |
download | genenetwork2-90c367b206a846a08ce4bb06eeed7be31fe1c367.tar.gz |
Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into testing
Diffstat (limited to 'test/lib/mapping.rb')
-rw-r--r-- | test/lib/mapping.rb | 58 |
1 files changed, 0 insertions, 58 deletions
diff --git a/test/lib/mapping.rb b/test/lib/mapping.rb deleted file mode 100644 index 20e5bd40..00000000 --- a/test/lib/mapping.rb +++ /dev/null @@ -1,58 +0,0 @@ -# In these tests we navigate from the main page to a specific trait then hit the different mapping tool buttons (In this case pylMM and r/qtl) followed by computing the results (marker regressions). - -require 'gntest' - -class MappingTest -end - -describe MappingTest do - before do - @agent = Mechanize.new - @agent.agent.http.ca_file = '/etc/ssl/certs/ca-certificates.crt' - end - - describe MappingTest do - it "pylmm mapping tool selection" do - url = $host+'/marker_regression' - - json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json')) - json["method"] = "pylmm" - # p json - page = @agent.post(URI.encode(url), json) - # Unpacking the page is slow - somehow - but the run is enough as a test - # form = page.forms_with("marker_regression")[0] - # form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P' - # form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal '6.749' - end - end - - describe MappingTest do - it "R/qtl mapping tool selection" do - url = $host+'/marker_regression' # ?trait_id=1435395_s_at&dataset=HC_M2_0606_P' - - json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json')) - # p json - page = @agent.post(URI.encode(url), - json, - ({'Content-Type' => 'application/x-www-form-urlencoded'})) - form = page.forms_with("marker_regression")[0] - p form - form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P' - form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal "15.034" - end - end - - describe MappingTest do - it "CIM mapping tool selection (using reaper)" do - url = $host+'/marker_regression' - - json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json')) - json["method"] = "reaper" - page = @agent.post(URI.encode(url), json) - form = page.forms_with("marker_regression")[0] - form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P' - form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal "15.034" - end - end - -end |