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authorMuriithi Frederick Muriuki2018-04-05 09:35:41 +0300
committerMuriithi Frederick Muriuki2018-04-05 09:35:41 +0300
commit90c367b206a846a08ce4bb06eeed7be31fe1c367 (patch)
treefe47ef5f4158494d49fdbca5a85c3985b37bed7c /test/lib/mapping.rb
parent31747256e466456cc88aac60780836a6534f18cd (diff)
parentb152aca03be73655d2fb5eda17d533504ed900e2 (diff)
downloadgenenetwork2-90c367b206a846a08ce4bb06eeed7be31fe1c367.tar.gz
Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into testing
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diff --git a/test/lib/mapping.rb b/test/lib/mapping.rb
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-# In these tests we navigate from the main page to a specific trait then hit the different mapping tool buttons (In this case pylMM and r/qtl) followed by computing the results (marker regressions).
-
-require 'gntest'
-
-class MappingTest
-end
-
-describe MappingTest do
- before do
- @agent = Mechanize.new
- @agent.agent.http.ca_file = '/etc/ssl/certs/ca-certificates.crt'
- end
-
- describe MappingTest do
- it "pylmm mapping tool selection" do
- url = $host+'/marker_regression'
-
- json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
- json["method"] = "pylmm"
- # p json
- page = @agent.post(URI.encode(url), json)
- # Unpacking the page is slow - somehow - but the run is enough as a test
- # form = page.forms_with("marker_regression")[0]
- # form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
- # form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal '6.749'
- end
- end
-
- describe MappingTest do
- it "R/qtl mapping tool selection" do
- url = $host+'/marker_regression' # ?trait_id=1435395_s_at&dataset=HC_M2_0606_P'
-
- json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
- # p json
- page = @agent.post(URI.encode(url),
- json,
- ({'Content-Type' => 'application/x-www-form-urlencoded'}))
- form = page.forms_with("marker_regression")[0]
- p form
- form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
- form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal "15.034"
- end
- end
-
- describe MappingTest do
- it "CIM mapping tool selection (using reaper)" do
- url = $host+'/marker_regression'
-
- json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
- json["method"] = "reaper"
- page = @agent.post(URI.encode(url), json)
- form = page.forms_with("marker_regression")[0]
- form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
- form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal "15.034"
- end
- end
-
-end