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authorPjotr Prins2018-04-02 08:49:53 +0000
committerPjotr Prins2018-04-02 08:49:53 +0000
commit0c600598b4f1c8a19b3bf13aa6cb197494a9c122 (patch)
treec29df93ea790b655c462ecd99b2ba00e04d105f5 /test/lib/mapping.rb
parent0a5c128249c7d2fe3fc7760892614f8a93d68e3c (diff)
downloadgenenetwork2-0c600598b4f1c8a19b3bf13aa6cb197494a9c122.tar.gz
Testing moved to Python
Diffstat (limited to 'test/lib/mapping.rb')
-rw-r--r--test/lib/mapping.rb58
1 files changed, 0 insertions, 58 deletions
diff --git a/test/lib/mapping.rb b/test/lib/mapping.rb
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-# In these tests we navigate from the main page to a specific trait then hit the different mapping tool buttons (In this case pylMM and r/qtl) followed by computing the results (marker regressions).
-
-require 'gntest'
-
-class MappingTest
-end
-
-describe MappingTest do
- before do
- @agent = Mechanize.new
- @agent.agent.http.ca_file = '/etc/ssl/certs/ca-certificates.crt'
- end
-
- describe MappingTest do
- it "pylmm mapping tool selection" do
- url = $host+'/marker_regression'
-
- json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
- json["method"] = "pylmm"
- # p json
- page = @agent.post(URI.encode(url), json)
- # Unpacking the page is slow - somehow - but the run is enough as a test
- # form = page.forms_with("marker_regression")[0]
- # form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
- # form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal '6.749'
- end
- end
-
- describe MappingTest do
- it "R/qtl mapping tool selection" do
- url = $host+'/marker_regression' # ?trait_id=1435395_s_at&dataset=HC_M2_0606_P'
-
- json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
- # p json
- page = @agent.post(URI.encode(url),
- json,
- ({'Content-Type' => 'application/x-www-form-urlencoded'}))
- form = page.forms_with("marker_regression")[0]
- p form
- form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
- form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal "15.034"
- end
- end
-
- describe MappingTest do
- it "CIM mapping tool selection (using reaper)" do
- url = $host+'/marker_regression'
-
- json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
- json["method"] = "reaper"
- page = @agent.post(URI.encode(url), json)
- form = page.forms_with("marker_regression")[0]
- form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
- form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal "15.034"
- end
- end
-
-end