Wrap `map()` in a `list` call

Run `2to3-3.8 -f map -w .`

See: <https://docs.python.org/2/library/2to3.html#2to3fixer-map>

3 files changed, 17 insertions, 17 deletions

diff --git a/scripts/maintenance/QTL_Reaper_v6.py b/scripts/maintenance/QTL_Reaper_v6.py
index 7fb56eca..2fbeb53b 100755
--- a/scripts/maintenance/QTL_Reaper_v6.py
+++ b/scripts/maintenance/QTL_Reaper_v6.py
@@ -23,7 +23,7 @@ for item in results:
 ProbeSetFreezeIds=sys.argv[1:]
 if ProbeSetFreezeIds:
 	#####convert the Ids to integer
-	ProbeSetFreezeIds=map(int, ProbeSetFreezeIds)
+	ProbeSetFreezeIds=list(map(int, ProbeSetFreezeIds))
 
 else:
 	#####get all of the dataset that need be updated
diff --git a/scripts/maintenance/readProbeSetMean_v7.py b/scripts/maintenance/readProbeSetMean_v7.py
index fea26731..97767715 100755
--- a/scripts/maintenance/readProbeSetMean_v7.py
+++ b/scripts/maintenance/readProbeSetMean_v7.py
@@ -61,14 +61,14 @@ GeneList = []
 isCont = 1
 header = fp.readline()
 header = string.split(string.strip(header),'\t')
-header = map(string.strip, header)
+header = list(map(string.strip, header))
 nfield = len(header)
 line = fp.readline()
 
 kj=0
 while line:
 	line2 = string.split(string.strip(line),'\t')
-	line2 = map(string.strip, line2)
+	line2 = list(map(string.strip, line2))
 	if len(line2) != nfield:
 		print(("Error : " + line))
 		isCont = 0
@@ -80,7 +80,7 @@ while line:
 	if kj%100000 == 0:
 		print(('checked ',kj,' lines'))
 
-GeneList = map(string.lower, GeneList)
+GeneList = list(map(string.lower, GeneList))
 GeneList.sort()
 	
 if isCont==0:
@@ -100,8 +100,8 @@ isCont = 1
 fp.seek(0)
 header = fp.readline()
 header = string.split(string.strip(header),'\t')
-header = map(string.strip, header)
-header = map(translateAlias, header)
+header = list(map(string.strip, header))
+header = list(map(translateAlias, header))
 header = header[dataStart:]
 Ids = []
 for item in header:
@@ -128,7 +128,7 @@ print('Check if each ProbeSet exist in database')
 line = fp.readline()
 line = fp.readline()
 line2 = string.split(string.strip(line),'\t')
-line2 = map(string.strip, line2)
+line2 = list(map(string.strip, line2))
 PId = line2[0]
 
 db.execute('select Id from ProbeSet where Name="%s" and ChipId=%d' % (PId, GeneChipId) )
@@ -148,7 +148,7 @@ for item in results:
 	
 print(Names)
 
-Names = map(string.lower, Names)
+Names = list(map(string.lower, Names))
 
 Names.sort() # -- Fixed the lower case problem of ProbeSets affx-mur_b2_at  doesn't exist --#
 
@@ -223,7 +223,7 @@ values1 = []
 values2 = []
 while line:
 	line2 = string.split(string.strip(line),'\t')
-	line2 = map(string.strip, line2)
+	line2 = list(map(string.strip, line2))
 	PId = line2[0]
 	recordId = NameIds[PId]
 
diff --git a/scripts/maintenance/readProbeSetSE_v7.py b/scripts/maintenance/readProbeSetSE_v7.py
index 79ed455f..7b2fee87 100755
--- a/scripts/maintenance/readProbeSetSE_v7.py
+++ b/scripts/maintenance/readProbeSetSE_v7.py
@@ -72,14 +72,14 @@ GeneList = []
 isCont = 1
 header = fp.readline()
 header = string.split(string.strip(header), '\t')
-header = map(string.strip, header)
+header = list(map(string.strip, header))
 nfield = len(header)
 line = fp.readline()
 
 kj = 0
 while line:
     line2 = string.split(string.strip(line), '\t')
-    line2 = map(string.strip, line2)
+    line2 = list(map(string.strip, line2))
     if len(line2) != nfield:
         isCont = 0
         print(("Error : " + line))
@@ -91,7 +91,7 @@ while line:
     if kj % 100000 == 0:
         print(('checked ', kj, ' lines'))
 
-GeneList = map(string.lower, GeneList)
+GeneList = list(map(string.lower, GeneList))
 GeneList.sort()
 
 if isCont == 0:
@@ -111,8 +111,8 @@ isCont = 1
 fp.seek(0)
 header = fp.readline()
 header = string.split(string.strip(header), '\t')
-header = map(string.strip, header)
-header = map(translateAlias, header)
+header = list(map(string.strip, header))
+header = list(map(translateAlias, header))
 header = header[dataStart:]
 Ids = []
 for item in header:
@@ -139,7 +139,7 @@ print('Check if each ProbeSet exist in database')
 line = fp.readline()
 line = fp.readline()
 line2 = string.split(string.strip(line), '\t')
-line2 = map(string.strip, line2)
+line2 = list(map(string.strip, line2))
 PId = line2[0]
 
 db.execute('select Id from ProbeSet where Name="%s" and ChipId=%d' %
@@ -158,7 +158,7 @@ results = db.fetchall()
 Names = []
 for item in results:
     Names.append(item[0])
-    Names = map(string.lower, Names)
+    Names = list(map(string.lower, Names))
     Names.sort()  # -- Fixed the lower case problem of ProbeSets affx-mur_b2_at  doesn't exist --#
 
 ##---- compare genelist with names ----##
@@ -220,7 +220,7 @@ line = fp.readline()
 kj = 0
 while line:
     line2 = string.split(string.strip(line), '\t')
-    line2 = map(string.strip, line2)
+    line2 = list(map(string.strip, line2))
 
     CellId = line2[0]
     if not ProbeNameId.has_key(CellId):