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author | BonfaceKilz | 2020-10-29 01:23:22 +0300 |
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committer | BonfaceKilz | 2020-10-29 01:23:22 +0300 |
commit | a56e5e9d5d0c3f157599677e937deb0bbb71debb (patch) | |
tree | d3fae7421ddb5d285a995fd2654df25b16edf087 /scripts | |
parent | 7410a1f4fa8628fa087a1fb682a9d6bb54160f68 (diff) | |
download | genenetwork2-a56e5e9d5d0c3f157599677e937deb0bbb71debb.tar.gz |
Replace map on strip with a list comprehension that calls strip()
* scripts/maintenance/readProbeSetSE_v7.py: In Python3 you can't map
string.strip on a list of strings. Instead use a list comprehension
and apply strip() on each element of the list.
* wqflask/wqflask/marker_regression/plink_mapping.py: Ditto.
* wqflask/wqflask/snp_browser/snp_browser.py: Ditto.
Diffstat (limited to 'scripts')
-rwxr-xr-x | scripts/maintenance/readProbeSetSE_v7.py | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/scripts/maintenance/readProbeSetSE_v7.py b/scripts/maintenance/readProbeSetSE_v7.py index edd9e7b0..2cfe2e07 100755 --- a/scripts/maintenance/readProbeSetSE_v7.py +++ b/scripts/maintenance/readProbeSetSE_v7.py @@ -72,14 +72,14 @@ GeneList = [] isCont = 1 header = fp.readline() header = header.strip().split('\t') -header = list(map(string.strip, header)) +header = [item.strip() for item in header] nfield = len(header) line = fp.readline() kj = 0 while line: line2 = line.strip().split('\t') - line2 = list(map(string.strip, line2)) + line2 = [item.strip() for item in line2] if len(line2) != nfield: isCont = 0 print(("Error : " + line)) @@ -110,7 +110,7 @@ isCont = 1 fp.seek(0) header = fp.readline() header = header.strip().split('\t') -header = list(map(string.strip, header)) +header = [item.strip() for item in header] header = list(map(translateAlias, header)) header = header[dataStart:] Ids = [] |