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author | Munyoki Kilyungi | 2023-02-03 12:58:13 +0300 |
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committer | BonfaceKilz | 2023-02-03 13:08:35 +0300 |
commit | c7d242233403594d7a5422344a49a16c2c738222 (patch) | |
tree | 216ce9923cc103e05790cf6d3ae4d304fb3a6018 /scripts/performance/timeit_gn2.py | |
parent | ceaefbd3022044f13ba2d763598460b83bfa19ee (diff) | |
download | genenetwork2-c7d242233403594d7a5422344a49a16c2c738222.tar.gz |
Add perf scripts that compare fetching a trait using GN API vs LMDB
* scripts/performance/(README,org, timeit_gn2.py, timeit_lmdb.py): New
files.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'scripts/performance/timeit_gn2.py')
-rw-r--r-- | scripts/performance/timeit_gn2.py | 54 |
1 files changed, 54 insertions, 0 deletions
diff --git a/scripts/performance/timeit_gn2.py b/scripts/performance/timeit_gn2.py new file mode 100644 index 00000000..1c64e22c --- /dev/null +++ b/scripts/performance/timeit_gn2.py @@ -0,0 +1,54 @@ +import sys +import timeit + + +print(timeit.timeit( +""" +class UserSessionSimulator(): + def __init__(self, user_id): + self._user_id = user_id + + @property + def user_id(self): + return self._user_id + + +def dump_sample_data(dataset_name, trait_id): + with database_connection() as conn, conn.cursor() as cursor: + sample_data = {"headers": ["Name", "Value", "SE"], "data": []} + + with app.app_context(): + g.user_session = UserSessionSimulator(None) + data = show_trait.ShowTrait( + cursor, user_id=None, + kw={ + "trait_id": trait_id, + "dataset": dataset_name + } + ) + attributes = data.js_data.get("attributes") + for id_ in attributes: + sample_data["headers"].append(attributes[id_].name) + for sample in data.js_data.get("sample_lists")[0]: + sample_data["data"].append( + [ + sample.name, + sample.value or 'x', + sample.variance or 'x', + *[str(sample.extra_attributes.get(str(key), "x")) + for key in attributes], + ]) + return sample_data + +print(dump_sample_data("HLCPublish", "10001")) +""", + setup=""" +# Required Evils! +from flask import g +from wqflask import app + +from wqflask.database import database_connection +from wqflask.show_trait import show_trait +""", + number=int(sys.argv[1]) +)) |