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authorMunyoki Kilyungi2023-02-03 12:58:13 +0300
committerBonfaceKilz2023-02-03 13:08:35 +0300
commitc7d242233403594d7a5422344a49a16c2c738222 (patch)
tree216ce9923cc103e05790cf6d3ae4d304fb3a6018 /scripts/performance/timeit_gn2.py
parentceaefbd3022044f13ba2d763598460b83bfa19ee (diff)
downloadgenenetwork2-c7d242233403594d7a5422344a49a16c2c738222.tar.gz
Add perf scripts that compare fetching a trait using GN API vs LMDB
* scripts/performance/(README,org, timeit_gn2.py, timeit_lmdb.py): New
files.

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'scripts/performance/timeit_gn2.py')
-rw-r--r--scripts/performance/timeit_gn2.py54
1 files changed, 54 insertions, 0 deletions
diff --git a/scripts/performance/timeit_gn2.py b/scripts/performance/timeit_gn2.py
new file mode 100644
index 00000000..1c64e22c
--- /dev/null
+++ b/scripts/performance/timeit_gn2.py
@@ -0,0 +1,54 @@
+import sys
+import timeit
+
+
+print(timeit.timeit(
+"""
+class UserSessionSimulator():
+    def __init__(self, user_id):
+        self._user_id = user_id
+
+    @property
+    def user_id(self):
+        return self._user_id
+
+
+def dump_sample_data(dataset_name, trait_id):
+    with database_connection() as conn, conn.cursor() as cursor:
+        sample_data = {"headers": ["Name", "Value", "SE"], "data": []}
+
+        with app.app_context():
+            g.user_session = UserSessionSimulator(None)
+            data = show_trait.ShowTrait(
+                cursor, user_id=None,
+                kw={
+                    "trait_id": trait_id,
+                    "dataset": dataset_name
+                }
+            )
+            attributes = data.js_data.get("attributes")
+            for id_ in attributes:
+                sample_data["headers"].append(attributes[id_].name)
+            for sample in data.js_data.get("sample_lists")[0]:
+                sample_data["data"].append(
+                    [
+                        sample.name,
+                        sample.value or 'x',
+                        sample.variance or 'x',
+                        *[str(sample.extra_attributes.get(str(key), "x"))
+                          for key in attributes],
+                    ])
+            return sample_data
+
+print(dump_sample_data("HLCPublish", "10001"))
+""",
+    setup="""
+# Required Evils!
+from flask import g
+from wqflask import app
+
+from wqflask.database import database_connection
+from wqflask.show_trait import show_trait
+""",
+    number=int(sys.argv[1])
+))