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author | BonfaceKilz | 2020-08-19 02:00:11 +0300 |
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committer | BonfaceKilz | 2020-08-19 02:33:46 +0300 |
commit | 06edbb8455f1e85a3818c33c4ef4d42e6a061d43 (patch) | |
tree | 2ed7a576394f46e93512815cb6b02951ac64a58e /scripts/maintenance/readProbeSetSE_v7.py | |
parent | 4e10f4bd8fb902810ee033abb8d509ab641308e1 (diff) | |
download | genenetwork2-06edbb8455f1e85a3818c33c4ef4d42e6a061d43.tar.gz |
Wrap `map()` in a `list` call
Run `2to3-3.8 -f map -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-map>
Diffstat (limited to 'scripts/maintenance/readProbeSetSE_v7.py')
-rwxr-xr-x | scripts/maintenance/readProbeSetSE_v7.py | 16 |
1 files changed, 8 insertions, 8 deletions
diff --git a/scripts/maintenance/readProbeSetSE_v7.py b/scripts/maintenance/readProbeSetSE_v7.py index 79ed455f..7b2fee87 100755 --- a/scripts/maintenance/readProbeSetSE_v7.py +++ b/scripts/maintenance/readProbeSetSE_v7.py @@ -72,14 +72,14 @@ GeneList = [] isCont = 1 header = fp.readline() header = string.split(string.strip(header), '\t') -header = map(string.strip, header) +header = list(map(string.strip, header)) nfield = len(header) line = fp.readline() kj = 0 while line: line2 = string.split(string.strip(line), '\t') - line2 = map(string.strip, line2) + line2 = list(map(string.strip, line2)) if len(line2) != nfield: isCont = 0 print(("Error : " + line)) @@ -91,7 +91,7 @@ while line: if kj % 100000 == 0: print(('checked ', kj, ' lines')) -GeneList = map(string.lower, GeneList) +GeneList = list(map(string.lower, GeneList)) GeneList.sort() if isCont == 0: @@ -111,8 +111,8 @@ isCont = 1 fp.seek(0) header = fp.readline() header = string.split(string.strip(header), '\t') -header = map(string.strip, header) -header = map(translateAlias, header) +header = list(map(string.strip, header)) +header = list(map(translateAlias, header)) header = header[dataStart:] Ids = [] for item in header: @@ -139,7 +139,7 @@ print('Check if each ProbeSet exist in database') line = fp.readline() line = fp.readline() line2 = string.split(string.strip(line), '\t') -line2 = map(string.strip, line2) +line2 = list(map(string.strip, line2)) PId = line2[0] db.execute('select Id from ProbeSet where Name="%s" and ChipId=%d' % @@ -158,7 +158,7 @@ results = db.fetchall() Names = [] for item in results: Names.append(item[0]) - Names = map(string.lower, Names) + Names = list(map(string.lower, Names)) Names.sort() # -- Fixed the lower case problem of ProbeSets affx-mur_b2_at doesn't exist --# ##---- compare genelist with names ----## @@ -220,7 +220,7 @@ line = fp.readline() kj = 0 while line: line2 = string.split(string.strip(line), '\t') - line2 = map(string.strip, line2) + line2 = list(map(string.strip, line2)) CellId = line2[0] if not ProbeNameId.has_key(CellId): |