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authorBonfaceKilz2020-10-29 01:23:22 +0300
committerBonfaceKilz2020-10-29 01:23:22 +0300
commita56e5e9d5d0c3f157599677e937deb0bbb71debb (patch)
treed3fae7421ddb5d285a995fd2654df25b16edf087 /scripts/maintenance/readProbeSetSE_v7.py
parent7410a1f4fa8628fa087a1fb682a9d6bb54160f68 (diff)
downloadgenenetwork2-a56e5e9d5d0c3f157599677e937deb0bbb71debb.tar.gz
Replace map on strip with a list comprehension that calls strip()
* scripts/maintenance/readProbeSetSE_v7.py: In Python3 you can't map string.strip on a list of strings. Instead use a list comprehension and apply strip() on each element of the list. * wqflask/wqflask/marker_regression/plink_mapping.py: Ditto. * wqflask/wqflask/snp_browser/snp_browser.py: Ditto.
Diffstat (limited to 'scripts/maintenance/readProbeSetSE_v7.py')
-rwxr-xr-xscripts/maintenance/readProbeSetSE_v7.py6
1 files changed, 3 insertions, 3 deletions
diff --git a/scripts/maintenance/readProbeSetSE_v7.py b/scripts/maintenance/readProbeSetSE_v7.py
index edd9e7b0..2cfe2e07 100755
--- a/scripts/maintenance/readProbeSetSE_v7.py
+++ b/scripts/maintenance/readProbeSetSE_v7.py
@@ -72,14 +72,14 @@ GeneList = []
isCont = 1
header = fp.readline()
header = header.strip().split('\t')
-header = list(map(string.strip, header))
+header = [item.strip() for item in header]
nfield = len(header)
line = fp.readline()
kj = 0
while line:
line2 = line.strip().split('\t')
- line2 = list(map(string.strip, line2))
+ line2 = [item.strip() for item in line2]
if len(line2) != nfield:
isCont = 0
print(("Error : " + line))
@@ -110,7 +110,7 @@ isCont = 1
fp.seek(0)
header = fp.readline()
header = header.strip().split('\t')
-header = list(map(string.strip, header))
+header = [item.strip() for item in header]
header = list(map(translateAlias, header))
header = header[dataStart:]
Ids = []