Merge branch 'flask' of http://github.com/zsloan/genenetwork

3 files changed, 102 insertions, 0 deletions

diff --git a/misc/new_variable_names.txt b/misc/new_variable_names.txt
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+RISet/riset -> group
+webqtlDataset.py -> data_set.py
+webqtlDataset (class object) -> DataSet
+database/db -> dataset/data_set
+DataEditingPage -> show_trait.py/show_trait.html
+webqtlTrait -> GeneralTrait
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diff --git a/misc/notes.txt b/misc/notes.txt
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+Clone code from git repository:
+git clone http://github.com/zsloan/genenetwork.git gene 
+
+============================================
+
+To get server running:
+
+!If having seemingly inexplicable problems with imports, make sure I've started the environment!
+
+Start up virtual environment:
+source ~/ve27/bin/activate
+
+To set WQFLASK_SETTINGS environment variable:
+export WQFLASK_SETTINGS=~/gene/wqflask/cfg/zach_settings.py (or wherever file is located)
+
+To change screen environment variable (if man not working or to get color, for example):
+export TERM=screen
+
+To search for commands in history if necessary:
+history | grep "(whatever is being searched for)"
+
+Run web server:
+/usr/local/nginx/sbin/nginx
+
+Run server:
+python runserver.py
+
+===========================================
+
+Start screen session:
+byobu -RD (to start)
+control-a then :multiuser on
+control-a then :acladd sam
+
+More info on sharing byobu screen with other users:
+http://wiki.networksecuritytoolkit.org/nstwiki/index.php/HowTo_Share_A_Terminal_Session_Using_Screen
+
+control-a c to create channel
+
+type: screen -list for sessions
+screen -r zas1024/25679.byobu
+
+or if only one:
+
+screen -r zas1024/
+
+===========================================
+
+Start up log:
+Go to /tmp and tail -f flask_gn_log
+
+===========================================
+
+Coffeescript Stuff:
+
+coffee -c (filename)
+coffee -c -w . (to watch for changes and recompile in current directory; the "." is for current directory)
+coffee --help (for information about setting options)
+
+===========================================
+
+Unset ASKPASS when trying to git push
+
+unset SSH_ASKPASS
+
+===========================================
+
+htop: Gives information on processes, cpu/memory load, etc
+dstat: Also gives various system information, resource usage, etc
+df: Reports file system disk space usage
+
+===========================================
+
+ll h*: Finds items in the directory starting with h
+
+===========================================
+
+tidyp - Improves/beautifies html code
+tidyp -m -i -w 100 index_page.html
+
+===========================================
+
+ps -ax - View processes
+
+kill (process #)
+
+===========================================
+
+Python stuff:
+
+Classes should always inherit "object"
+To iterate through dictionary items: for X, Y in MyDictionary.items():
+
+
diff --git a/misc/todo.txt b/misc/todo.txt
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+- Ask Rob about potentially recoding qtlreaper
+- Ask Rob about Probe/cellid traits
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