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| author | Zachary Sloan | 2013-07-09 17:07:13 -0500 |
|---|---|---|
| committer | Zachary Sloan | 2013-07-09 17:07:13 -0500 |
| commit | c0b7da4b4c2bd98353eb980402075318010a79a3 (patch) | |
| tree | 52d6b2f29069b34a8b8940950f55ca3fbd451a36 /misc/gn_installation_notes.txt | |
| parent | 05814fb8654d6479657db55c20a2d4851a7db931 (diff) | |
| download | genenetwork2-c0b7da4b4c2bd98353eb980402075318010a79a3.tar.gz | |
Committing installation notes before editing them more
Diffstat (limited to 'misc/gn_installation_notes.txt')
| -rw-r--r-- | misc/gn_installation_notes.txt | 24 |
1 files changed, 18 insertions, 6 deletions
diff --git a/misc/gn_installation_notes.txt b/misc/gn_installation_notes.txt index 2607f2b5..e31273b1 100644 --- a/misc/gn_installation_notes.txt +++ b/misc/gn_installation_notes.txt @@ -52,8 +52,23 @@ apt-file search _______ Install pip: sudo apt-get install python-pip -Install from requirements.txt: -pip install -r gene/wqflask/requirements.txt -t ve27 +REMEMBER TO SOURCE VE BEFORE INSTALLING + +Comment out in requirements.txt: +Reaper +numarray + +Install from requirements.txt (after activating virtualenv): +pip install -r gene/misc/requirements.txt + +When it hits error with install MySQL-Python, install libmysqlclient-dev: +sudo apt-get install libmysqlclient-dev + +When hits error with numpy install python-dev: +sudo apt-get install python-dev + +When hits error with scipy: +sudo apt-get install libatlas-base-dev gfortran g++ ============================================ @@ -116,10 +131,7 @@ Installing QTL Reaper wget http://downloads.sourceforge.net/project/qtlreaper/qtlreaper/1.1.1/qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb mv -v qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb qtlreaper-1.1.1.tar.gz tar xvf qtlreaper-1.1.1.tar.gz (to unzip) -python setup.py build -sudo mkdir /home/zas1024/ve27/include/python2.7/Reaper -sudo chown /home/zas1024/ve27/include/python2.7/Reaper (or whereever the directory is; the problem -involved the fact that doing "sudo python setup.py install" doesn't install within the virtualenv) +mkdir /home/zas1024/ve27/include/python2.7/Reaper python setup.py install =========================================== |