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| author | Zachary Sloan | 2013-01-24 17:46:19 -0600 |
|---|---|---|
| committer | Zachary Sloan | 2013-01-24 17:46:19 -0600 |
| commit | 7be6c2c94c99148667a05f400ca47df1c472d964 (patch) | |
| tree | 31bb2bffadeef9826ffc6504c492c9cedb8a49ff /misc/gn_installation_notes.txt | |
| parent | 2a876f5417625bdfb039a1d885ee0a4ab026498e (diff) | |
| download | genenetwork2-7be6c2c94c99148667a05f400ca47df1c472d964.tar.gz | |
Added a lot to the notes in the process of setting up on the
new server
Diffstat (limited to 'misc/gn_installation_notes.txt')
| -rw-r--r-- | misc/gn_installation_notes.txt | 38 |
1 files changed, 36 insertions, 2 deletions
diff --git a/misc/gn_installation_notes.txt b/misc/gn_installation_notes.txt index 54e8fcee..173f2819 100644 --- a/misc/gn_installation_notes.txt +++ b/misc/gn_installation_notes.txt @@ -27,7 +27,18 @@ sudo pip install virtualenv Tell virtualenv which directory to use: virtualenv ve27 +Start up virtual environment: +source ~/ve27/bin/activate + +=========================================== +Installing yaml + +Install libyaml-dev: +sudo apt-get install libyaml-dev + +Install yaml: +pip install pyyaml =========================================== @@ -43,8 +54,11 @@ Installing QTL Reaper wget http://downloads.sourceforge.net/project/qtlreaper/qtlreaper/1.1.1/qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb mv -v qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb qtlreaper-1.1.1.tar.gz tar xvf qtlreaper-1.1.1.tar.gz (to unzip) -sudo python setup.py build -sudo python setup.py install +python setup.py build +sudo mkdir /home/zas1024/ve27/include/python2.7/Reaper +sudo chown /home/zas1024/ve27/include/python2.7/Reaper (or whereever the directory is; the problem +involved the fact that doing "sudo python setup.py install" doesn't install within the virtualenv) +python setup.py install =========================================== @@ -63,6 +77,26 @@ sudo apt-get install r-base-dev =========================================== +Install Parallel Python (pp) + +wget http://www.parallelpython.com/downloads/pp/pp-1.6.3.tar.gz +tar xvf pp-1.6.3.tar.gz +python setup.py install + +========================================== + +Install requests + +pip install requests + +========================================== + +Install logging_tree + +pip install logging_tree + +========================================== + To get server running: !If having seemingly inexplicable problems with imports, make sure I've started the environment! |