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authorPjotr Prins2016-06-18 06:39:38 +0000
committerPjotr Prins2016-06-18 06:39:38 +0000
commite9275a0eae086c3122d54e7207a4d872bdb0706c (patch)
treeb6bd415484fe55cff394bb610667d17d1f4f29b0 /genotype_files
parentf62c8ec7fa92f164b345b853c839afe6a72708b3 (diff)
downloadgenenetwork2-e9275a0eae086c3122d54e7207a4d872bdb0706c.tar.gz
Changed file permssions to non-executable
Diffstat (limited to 'genotype_files')
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AD-cases-controls-Myers.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AD-cases-controls.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AKXD.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AKXD.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AKXD.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AKXD.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AKXD.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AKXD.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AKXDMB0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AKXD_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AKXDforQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXB.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXB.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXB.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXB.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXB.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXB.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXBXA.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXBXA.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXBXA.geno.update.csv0
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-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXBXA.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXBXA.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXBXAMB0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXBXA_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXBXAforQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/AXBforQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/Aging-Brain-UCI.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6BTBRF2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6BTBRF2.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6BTBRF2.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6BTBRF2.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6BTBRF2.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6BTBRF2.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6BTBRF2_no_Mb.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6BTBRF2forQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2F2-PSU.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2F2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2F2.geno.201210250
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2F2.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2F2.geno.update.csv0
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-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2F2.geno_Aug050
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2F2.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2F2MB0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2F2_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2F2forQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/B6D2RI.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BDF2-1999.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BDF2-1999_wrong_Mb.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BDF2-2005.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BDF2-2005.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BDF2-2005.geno.update.csv0
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-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BDF2-2005_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BDF2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BDF2.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BDF2.geno.update.csv0
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-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BHF2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BHF2_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BHF2_mm9_wrong_order.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BHHBF2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BHHBF2_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXA.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXA.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXA.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXA.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXA.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXA.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXAforQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD300.geno.2brmv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD300.geno.76360
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD300.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD300MB0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD300forQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXDMB0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD_Nov_23_2010_before_polish_101_102_103.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD_Nov_24_2010_before_polish_55_81.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXD_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXDforQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXH.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXH.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXH.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXH.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXH.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXH.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXH_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BXHforQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BayXSha.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BayXSha.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BayXSha.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BayXSha.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BayXSha.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BayXSha.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BayXShaMB0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/BayXShaforQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/Brain-Normal-NIH-Gibbs.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/C57BL-6JxC57BL-6NJF2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CANDLE.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CEPH-2004.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CEPH-2004.geno.200909220
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CEPH-2009.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CTB6B6CTF2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CTB6F2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CTB6F2_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CXB.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CXB.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CXB.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CXB.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CXB.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CXB.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CXB_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/CXBforQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXBur.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXBur.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXBur.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXBur.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXBur.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXCvi.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXCvi.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXCvi.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXCvi.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXCvi.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColXCvi.txt0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/ColxBur.txt0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/DGRP.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/GTEx.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HB.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HCP.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HLC.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HLT.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HS-CC.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HS.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HSB.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HSNIH.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HXBBXH.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HXBBXH.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HXBBXH.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HXBBXH.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HXBBXH.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HXBBXH.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HXBBXHMB0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/HXBBXHforQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/Human.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/J12XJ58F11.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/J12XJ58F2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/LXP.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/LXS.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/LXS.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/LXS.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/LXS.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/LXS.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/LXS.map0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/LXSMB0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/LXS_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/LXSforQTL0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/Linsenbardt-Boehm.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/MDP.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/MDP.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/MDP.geno.update.csv0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/MDP.geno.update.recal0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/MDP.geno.update.reorder0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/MDPBK.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/MDP_mm8.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/Macaca-fasicularis.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/NZBXFVB-N2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/Oregon-R_x_2b3.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/QSM.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/SOTNOT-OHSU.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/SRxSHRSPF2.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/SRxSHRSPF2_original.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/SXM.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/SXM.geno.update0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/SXM.geno.update.csv0
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-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/Scripps-2013.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/mouseChromInfo.txt0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/mouseChromInfo_mm5.txt0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/output.geno0
-rw-r--r--[-rwxr-xr-x]genotype_files/genotype/process.py0
191 files changed, 0 insertions, 0 deletions
diff --git a/genotype_files/genotype/AD-cases-controls-Myers.geno b/genotype_files/genotype/AD-cases-controls-Myers.geno
index 5429cfb0..5429cfb0 100755..100644
--- a/genotype_files/genotype/AD-cases-controls-Myers.geno
+++ b/genotype_files/genotype/AD-cases-controls-Myers.geno
diff --git a/genotype_files/genotype/AD-cases-controls.geno b/genotype_files/genotype/AD-cases-controls.geno
index 07aa0896..07aa0896 100755..100644
--- a/genotype_files/genotype/AD-cases-controls.geno
+++ b/genotype_files/genotype/AD-cases-controls.geno
diff --git a/genotype_files/genotype/AKXD.geno b/genotype_files/genotype/AKXD.geno
index 623e4ed1..623e4ed1 100755..100644
--- a/genotype_files/genotype/AKXD.geno
+++ b/genotype_files/genotype/AKXD.geno
diff --git a/genotype_files/genotype/AKXD.geno.update b/genotype_files/genotype/AKXD.geno.update
index 5f490334..5f490334 100755..100644
--- a/genotype_files/genotype/AKXD.geno.update
+++ b/genotype_files/genotype/AKXD.geno.update
diff --git a/genotype_files/genotype/AKXD.geno.update.csv b/genotype_files/genotype/AKXD.geno.update.csv
index fea7ec25..fea7ec25 100755..100644
--- a/genotype_files/genotype/AKXD.geno.update.csv
+++ b/genotype_files/genotype/AKXD.geno.update.csv
diff --git a/genotype_files/genotype/AKXD.geno.update.recal b/genotype_files/genotype/AKXD.geno.update.recal
index 0a152e01..0a152e01 100755..100644
--- a/genotype_files/genotype/AKXD.geno.update.recal
+++ b/genotype_files/genotype/AKXD.geno.update.recal
diff --git a/genotype_files/genotype/AKXD.geno.update.reorder b/genotype_files/genotype/AKXD.geno.update.reorder
index a25ad8eb..a25ad8eb 100755..100644
--- a/genotype_files/genotype/AKXD.geno.update.reorder
+++ b/genotype_files/genotype/AKXD.geno.update.reorder
diff --git a/genotype_files/genotype/AKXD.map b/genotype_files/genotype/AKXD.map
index d9df35bf..d9df35bf 100755..100644
--- a/genotype_files/genotype/AKXD.map
+++ b/genotype_files/genotype/AKXD.map
diff --git a/genotype_files/genotype/AKXDMB b/genotype_files/genotype/AKXDMB
index ff60c5c7..ff60c5c7 100755..100644
--- a/genotype_files/genotype/AKXDMB
+++ b/genotype_files/genotype/AKXDMB
diff --git a/genotype_files/genotype/AKXD_mm8.geno b/genotype_files/genotype/AKXD_mm8.geno
index a25ad8eb..a25ad8eb 100755..100644
--- a/genotype_files/genotype/AKXD_mm8.geno
+++ b/genotype_files/genotype/AKXD_mm8.geno
diff --git a/genotype_files/genotype/AKXDforQTL b/genotype_files/genotype/AKXDforQTL
index 0a652b86..0a652b86 100755..100644
--- a/genotype_files/genotype/AKXDforQTL
+++ b/genotype_files/genotype/AKXDforQTL
diff --git a/genotype_files/genotype/AXB.geno b/genotype_files/genotype/AXB.geno
index 4a8dea60..4a8dea60 100755..100644
--- a/genotype_files/genotype/AXB.geno
+++ b/genotype_files/genotype/AXB.geno
diff --git a/genotype_files/genotype/AXB.geno.update b/genotype_files/genotype/AXB.geno.update
index 4a8dea60..4a8dea60 100755..100644
--- a/genotype_files/genotype/AXB.geno.update
+++ b/genotype_files/genotype/AXB.geno.update
diff --git a/genotype_files/genotype/AXB.geno.update.csv b/genotype_files/genotype/AXB.geno.update.csv
index e69de29b..e69de29b 100755..100644
--- a/genotype_files/genotype/AXB.geno.update.csv
+++ b/genotype_files/genotype/AXB.geno.update.csv
diff --git a/genotype_files/genotype/AXB.geno.update.recal b/genotype_files/genotype/AXB.geno.update.recal
index 4a8dea60..4a8dea60 100755..100644
--- a/genotype_files/genotype/AXB.geno.update.recal
+++ b/genotype_files/genotype/AXB.geno.update.recal
diff --git a/genotype_files/genotype/AXB.geno.update.reorder b/genotype_files/genotype/AXB.geno.update.reorder
index 4a8dea60..4a8dea60 100755..100644
--- a/genotype_files/genotype/AXB.geno.update.reorder
+++ b/genotype_files/genotype/AXB.geno.update.reorder
diff --git a/genotype_files/genotype/AXB.map b/genotype_files/genotype/AXB.map
index 1a6b2094..1a6b2094 100755..100644
--- a/genotype_files/genotype/AXB.map
+++ b/genotype_files/genotype/AXB.map
diff --git a/genotype_files/genotype/AXBXA.geno b/genotype_files/genotype/AXBXA.geno
index 14116ef3..14116ef3 100755..100644
--- a/genotype_files/genotype/AXBXA.geno
+++ b/genotype_files/genotype/AXBXA.geno
diff --git a/genotype_files/genotype/AXBXA.geno.update b/genotype_files/genotype/AXBXA.geno.update
index ea238a74..ea238a74 100755..100644
--- a/genotype_files/genotype/AXBXA.geno.update
+++ b/genotype_files/genotype/AXBXA.geno.update
diff --git a/genotype_files/genotype/AXBXA.geno.update.csv b/genotype_files/genotype/AXBXA.geno.update.csv
index 22d9336c..22d9336c 100755..100644
--- a/genotype_files/genotype/AXBXA.geno.update.csv
+++ b/genotype_files/genotype/AXBXA.geno.update.csv
diff --git a/genotype_files/genotype/AXBXA.geno.update.recal b/genotype_files/genotype/AXBXA.geno.update.recal
index 0663888a..0663888a 100755..100644
--- a/genotype_files/genotype/AXBXA.geno.update.recal
+++ b/genotype_files/genotype/AXBXA.geno.update.recal
diff --git a/genotype_files/genotype/AXBXA.geno.update.reorder b/genotype_files/genotype/AXBXA.geno.update.reorder
index cba66ef9..cba66ef9 100755..100644
--- a/genotype_files/genotype/AXBXA.geno.update.reorder
+++ b/genotype_files/genotype/AXBXA.geno.update.reorder
diff --git a/genotype_files/genotype/AXBXA.map b/genotype_files/genotype/AXBXA.map
index 2bc68899..2bc68899 100755..100644
--- a/genotype_files/genotype/AXBXA.map
+++ b/genotype_files/genotype/AXBXA.map
diff --git a/genotype_files/genotype/AXBXAMB b/genotype_files/genotype/AXBXAMB
index 94640d4c..94640d4c 100755..100644
--- a/genotype_files/genotype/AXBXAMB
+++ b/genotype_files/genotype/AXBXAMB
diff --git a/genotype_files/genotype/AXBXA_mm8.geno b/genotype_files/genotype/AXBXA_mm8.geno
index 72ab6c68..72ab6c68 100755..100644
--- a/genotype_files/genotype/AXBXA_mm8.geno
+++ b/genotype_files/genotype/AXBXA_mm8.geno
diff --git a/genotype_files/genotype/AXBXAforQTL b/genotype_files/genotype/AXBXAforQTL
index 933a615d..933a615d 100755..100644
--- a/genotype_files/genotype/AXBXAforQTL
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diff --git a/genotype_files/genotype/AXBforQTL b/genotype_files/genotype/AXBforQTL
index 17c16a1f..17c16a1f 100755..100644
--- a/genotype_files/genotype/AXBforQTL
+++ b/genotype_files/genotype/AXBforQTL
diff --git a/genotype_files/genotype/Aging-Brain-UCI.geno b/genotype_files/genotype/Aging-Brain-UCI.geno
index 9a012ad7..9a012ad7 100755..100644
--- a/genotype_files/genotype/Aging-Brain-UCI.geno
+++ b/genotype_files/genotype/Aging-Brain-UCI.geno
diff --git a/genotype_files/genotype/B6BTBRF2.geno b/genotype_files/genotype/B6BTBRF2.geno
index bb7765ee..bb7765ee 100755..100644
--- a/genotype_files/genotype/B6BTBRF2.geno
+++ b/genotype_files/genotype/B6BTBRF2.geno
diff --git a/genotype_files/genotype/B6BTBRF2.geno.update b/genotype_files/genotype/B6BTBRF2.geno.update
index 15da78a4..15da78a4 100755..100644
--- a/genotype_files/genotype/B6BTBRF2.geno.update
+++ b/genotype_files/genotype/B6BTBRF2.geno.update
diff --git a/genotype_files/genotype/B6BTBRF2.geno.update.csv b/genotype_files/genotype/B6BTBRF2.geno.update.csv
index e69de29b..e69de29b 100755..100644
--- a/genotype_files/genotype/B6BTBRF2.geno.update.csv
+++ b/genotype_files/genotype/B6BTBRF2.geno.update.csv
diff --git a/genotype_files/genotype/B6BTBRF2.geno.update.recal b/genotype_files/genotype/B6BTBRF2.geno.update.recal
index 15da78a4..15da78a4 100755..100644
--- a/genotype_files/genotype/B6BTBRF2.geno.update.recal
+++ b/genotype_files/genotype/B6BTBRF2.geno.update.recal
diff --git a/genotype_files/genotype/B6BTBRF2.geno.update.reorder b/genotype_files/genotype/B6BTBRF2.geno.update.reorder
index 15da78a4..15da78a4 100755..100644
--- a/genotype_files/genotype/B6BTBRF2.geno.update.reorder
+++ b/genotype_files/genotype/B6BTBRF2.geno.update.reorder
diff --git a/genotype_files/genotype/B6BTBRF2.map b/genotype_files/genotype/B6BTBRF2.map
index 316b670f..316b670f 100755..100644
--- a/genotype_files/genotype/B6BTBRF2.map
+++ b/genotype_files/genotype/B6BTBRF2.map
diff --git a/genotype_files/genotype/B6BTBRF2_no_Mb.geno b/genotype_files/genotype/B6BTBRF2_no_Mb.geno
index 15da78a4..15da78a4 100755..100644
--- a/genotype_files/genotype/B6BTBRF2_no_Mb.geno
+++ b/genotype_files/genotype/B6BTBRF2_no_Mb.geno
diff --git a/genotype_files/genotype/B6BTBRF2forQTL b/genotype_files/genotype/B6BTBRF2forQTL
index c839a065..c839a065 100755..100644
--- a/genotype_files/genotype/B6BTBRF2forQTL
+++ b/genotype_files/genotype/B6BTBRF2forQTL
diff --git a/genotype_files/genotype/B6D2F2-PSU.geno b/genotype_files/genotype/B6D2F2-PSU.geno
index 2753a1be..2753a1be 100755..100644
--- a/genotype_files/genotype/B6D2F2-PSU.geno
+++ b/genotype_files/genotype/B6D2F2-PSU.geno
diff --git a/genotype_files/genotype/B6D2F2.geno b/genotype_files/genotype/B6D2F2.geno
index a6bbeae4..a6bbeae4 100755..100644
--- a/genotype_files/genotype/B6D2F2.geno
+++ b/genotype_files/genotype/B6D2F2.geno
diff --git a/genotype_files/genotype/B6D2F2.geno.20121025 b/genotype_files/genotype/B6D2F2.geno.20121025
index e5928826..e5928826 100755..100644
--- a/genotype_files/genotype/B6D2F2.geno.20121025
+++ b/genotype_files/genotype/B6D2F2.geno.20121025
diff --git a/genotype_files/genotype/B6D2F2.geno.update b/genotype_files/genotype/B6D2F2.geno.update
index c8314907..c8314907 100755..100644
--- a/genotype_files/genotype/B6D2F2.geno.update
+++ b/genotype_files/genotype/B6D2F2.geno.update
diff --git a/genotype_files/genotype/B6D2F2.geno.update.csv b/genotype_files/genotype/B6D2F2.geno.update.csv
index 34170ced..34170ced 100755..100644
--- a/genotype_files/genotype/B6D2F2.geno.update.csv
+++ b/genotype_files/genotype/B6D2F2.geno.update.csv
diff --git a/genotype_files/genotype/B6D2F2.geno.update.recal b/genotype_files/genotype/B6D2F2.geno.update.recal
index c859ecbf..c859ecbf 100755..100644
--- a/genotype_files/genotype/B6D2F2.geno.update.recal
+++ b/genotype_files/genotype/B6D2F2.geno.update.recal
diff --git a/genotype_files/genotype/B6D2F2.geno.update.reorder b/genotype_files/genotype/B6D2F2.geno.update.reorder
index b77e715b..b77e715b 100755..100644
--- a/genotype_files/genotype/B6D2F2.geno.update.reorder
+++ b/genotype_files/genotype/B6D2F2.geno.update.reorder
diff --git a/genotype_files/genotype/B6D2F2.geno_Aug05 b/genotype_files/genotype/B6D2F2.geno_Aug05
index a1a53a1d..a1a53a1d 100755..100644
--- a/genotype_files/genotype/B6D2F2.geno_Aug05
+++ b/genotype_files/genotype/B6D2F2.geno_Aug05
diff --git a/genotype_files/genotype/B6D2F2.map b/genotype_files/genotype/B6D2F2.map
index a4b31d11..a4b31d11 100755..100644
--- a/genotype_files/genotype/B6D2F2.map
+++ b/genotype_files/genotype/B6D2F2.map
diff --git a/genotype_files/genotype/B6D2F2MB b/genotype_files/genotype/B6D2F2MB
index e676fc94..e676fc94 100755..100644
--- a/genotype_files/genotype/B6D2F2MB
+++ b/genotype_files/genotype/B6D2F2MB
diff --git a/genotype_files/genotype/B6D2F2_mm8.geno b/genotype_files/genotype/B6D2F2_mm8.geno
index b77e715b..b77e715b 100755..100644
--- a/genotype_files/genotype/B6D2F2_mm8.geno
+++ b/genotype_files/genotype/B6D2F2_mm8.geno
diff --git a/genotype_files/genotype/B6D2F2forQTL b/genotype_files/genotype/B6D2F2forQTL
index 2e2887a9..2e2887a9 100755..100644
--- a/genotype_files/genotype/B6D2F2forQTL
+++ b/genotype_files/genotype/B6D2F2forQTL
diff --git a/genotype_files/genotype/B6D2RI.geno b/genotype_files/genotype/B6D2RI.geno
index 0a880848..0a880848 100755..100644
--- a/genotype_files/genotype/B6D2RI.geno
+++ b/genotype_files/genotype/B6D2RI.geno
diff --git a/genotype_files/genotype/BDF2-1999.geno b/genotype_files/genotype/BDF2-1999.geno
index 721f3bb3..721f3bb3 100755..100644
--- a/genotype_files/genotype/BDF2-1999.geno
+++ b/genotype_files/genotype/BDF2-1999.geno
diff --git a/genotype_files/genotype/BDF2-1999_wrong_Mb.geno b/genotype_files/genotype/BDF2-1999_wrong_Mb.geno
index 166cc1a9..166cc1a9 100755..100644
--- a/genotype_files/genotype/BDF2-1999_wrong_Mb.geno
+++ b/genotype_files/genotype/BDF2-1999_wrong_Mb.geno
diff --git a/genotype_files/genotype/BDF2-2005.geno b/genotype_files/genotype/BDF2-2005.geno
index 4bffab91..4bffab91 100755..100644
--- a/genotype_files/genotype/BDF2-2005.geno
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diff --git a/genotype_files/genotype/BDF2-2005.geno.update b/genotype_files/genotype/BDF2-2005.geno.update
index 7a569b96..7a569b96 100755..100644
--- a/genotype_files/genotype/BDF2-2005.geno.update
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diff --git a/genotype_files/genotype/BDF2-2005.geno.update.csv b/genotype_files/genotype/BDF2-2005.geno.update.csv
index 310d44fc..310d44fc 100755..100644
--- a/genotype_files/genotype/BDF2-2005.geno.update.csv
+++ b/genotype_files/genotype/BDF2-2005.geno.update.csv
diff --git a/genotype_files/genotype/BDF2-2005.geno.update.recal b/genotype_files/genotype/BDF2-2005.geno.update.recal
index ae862cc1..ae862cc1 100755..100644
--- a/genotype_files/genotype/BDF2-2005.geno.update.recal
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diff --git a/genotype_files/genotype/BDF2-2005.geno.update.reorder b/genotype_files/genotype/BDF2-2005.geno.update.reorder
index ae862cc1..ae862cc1 100755..100644
--- a/genotype_files/genotype/BDF2-2005.geno.update.reorder
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diff --git a/genotype_files/genotype/BDF2-2005_mm8.geno b/genotype_files/genotype/BDF2-2005_mm8.geno
index c22bd458..c22bd458 100755..100644
--- a/genotype_files/genotype/BDF2-2005_mm8.geno
+++ b/genotype_files/genotype/BDF2-2005_mm8.geno
diff --git a/genotype_files/genotype/BDF2.geno b/genotype_files/genotype/BDF2.geno
index 468a1995..468a1995 100755..100644
--- a/genotype_files/genotype/BDF2.geno
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diff --git a/genotype_files/genotype/BDF2.geno.update b/genotype_files/genotype/BDF2.geno.update
index 68f10a9a..68f10a9a 100755..100644
--- a/genotype_files/genotype/BDF2.geno.update
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diff --git a/genotype_files/genotype/BDF2.geno.update.csv b/genotype_files/genotype/BDF2.geno.update.csv
index 513cdacb..513cdacb 100755..100644
--- a/genotype_files/genotype/BDF2.geno.update.csv
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diff --git a/genotype_files/genotype/BDF2.geno.update.recal b/genotype_files/genotype/BDF2.geno.update.recal
index 12931ebd..12931ebd 100755..100644
--- a/genotype_files/genotype/BDF2.geno.update.recal
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diff --git a/genotype_files/genotype/BDF2.geno.update.reorder b/genotype_files/genotype/BDF2.geno.update.reorder
index 468a1995..468a1995 100755..100644
--- a/genotype_files/genotype/BDF2.geno.update.reorder
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diff --git a/genotype_files/genotype/BHF2.geno b/genotype_files/genotype/BHF2.geno
index 36552d36..36552d36 100755..100644
--- a/genotype_files/genotype/BHF2.geno
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diff --git a/genotype_files/genotype/BHF2_mm8.geno b/genotype_files/genotype/BHF2_mm8.geno
index efd4f5ab..efd4f5ab 100755..100644
--- a/genotype_files/genotype/BHF2_mm8.geno
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diff --git a/genotype_files/genotype/BHF2_mm9_wrong_order.geno b/genotype_files/genotype/BHF2_mm9_wrong_order.geno
index d966753a..d966753a 100755..100644
--- a/genotype_files/genotype/BHF2_mm9_wrong_order.geno
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diff --git a/genotype_files/genotype/BHHBF2.geno b/genotype_files/genotype/BHHBF2.geno
index e16cd7e0..e16cd7e0 100755..100644
--- a/genotype_files/genotype/BHHBF2.geno
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diff --git a/genotype_files/genotype/BHHBF2_mm8.geno b/genotype_files/genotype/BHHBF2_mm8.geno
index 0be47dda..0be47dda 100755..100644
--- a/genotype_files/genotype/BHHBF2_mm8.geno
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diff --git a/genotype_files/genotype/BXA.geno b/genotype_files/genotype/BXA.geno
index 2a56400d..2a56400d 100755..100644
--- a/genotype_files/genotype/BXA.geno
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diff --git a/genotype_files/genotype/BXA.geno.update b/genotype_files/genotype/BXA.geno.update
index 2a56400d..2a56400d 100755..100644
--- a/genotype_files/genotype/BXA.geno.update
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diff --git a/genotype_files/genotype/BXA.geno.update.csv b/genotype_files/genotype/BXA.geno.update.csv
index e69de29b..e69de29b 100755..100644
--- a/genotype_files/genotype/BXA.geno.update.csv
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diff --git a/genotype_files/genotype/BXA.geno.update.recal b/genotype_files/genotype/BXA.geno.update.recal
index 2a56400d..2a56400d 100755..100644
--- a/genotype_files/genotype/BXA.geno.update.recal
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diff --git a/genotype_files/genotype/BXA.geno.update.reorder b/genotype_files/genotype/BXA.geno.update.reorder
index 2a56400d..2a56400d 100755..100644
--- a/genotype_files/genotype/BXA.geno.update.reorder
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diff --git a/genotype_files/genotype/BXA.map b/genotype_files/genotype/BXA.map
index 984c5065..984c5065 100755..100644
--- a/genotype_files/genotype/BXA.map
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diff --git a/genotype_files/genotype/BXAforQTL b/genotype_files/genotype/BXAforQTL
index e4cb924e..e4cb924e 100755..100644
--- a/genotype_files/genotype/BXAforQTL
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diff --git a/genotype_files/genotype/BXD.geno b/genotype_files/genotype/BXD.geno
index a7663c68..a7663c68 100755..100644
--- a/genotype_files/genotype/BXD.geno
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diff --git a/genotype_files/genotype/BXD.geno.update b/genotype_files/genotype/BXD.geno.update
index 604d359f..604d359f 100755..100644
--- a/genotype_files/genotype/BXD.geno.update
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diff --git a/genotype_files/genotype/BXD.geno.update.csv b/genotype_files/genotype/BXD.geno.update.csv
index 71ec5719..71ec5719 100755..100644
--- a/genotype_files/genotype/BXD.geno.update.csv
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diff --git a/genotype_files/genotype/BXD.geno.update.recal b/genotype_files/genotype/BXD.geno.update.recal
index e8a48cad..e8a48cad 100755..100644
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diff --git a/genotype_files/genotype/BXD.geno.update.reorder b/genotype_files/genotype/BXD.geno.update.reorder
index dac42afb..dac42afb 100755..100644
--- a/genotype_files/genotype/BXD.geno.update.reorder
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diff --git a/genotype_files/genotype/BXD.map b/genotype_files/genotype/BXD.map
index df285cf0..df285cf0 100755..100644
--- a/genotype_files/genotype/BXD.map
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diff --git a/genotype_files/genotype/BXD300.geno.2brmv b/genotype_files/genotype/BXD300.geno.2brmv
index 2e788d9d..2e788d9d 100755..100644
--- a/genotype_files/genotype/BXD300.geno.2brmv
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diff --git a/genotype_files/genotype/BXD300.geno.7636 b/genotype_files/genotype/BXD300.geno.7636
index 2e788d9d..2e788d9d 100755..100644
--- a/genotype_files/genotype/BXD300.geno.7636
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diff --git a/genotype_files/genotype/BXD300.map b/genotype_files/genotype/BXD300.map
index 4caf866b..4caf866b 100755..100644
--- a/genotype_files/genotype/BXD300.map
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diff --git a/genotype_files/genotype/BXD300MB b/genotype_files/genotype/BXD300MB
index 68929891..68929891 100755..100644
--- a/genotype_files/genotype/BXD300MB
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diff --git a/genotype_files/genotype/BXD300forQTL b/genotype_files/genotype/BXD300forQTL
index 79b484d0..79b484d0 100755..100644
--- a/genotype_files/genotype/BXD300forQTL
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diff --git a/genotype_files/genotype/BXDMB b/genotype_files/genotype/BXDMB
index 2cfe000b..2cfe000b 100755..100644
--- a/genotype_files/genotype/BXDMB
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diff --git a/genotype_files/genotype/BXD_Nov_23_2010_before_polish_101_102_103.geno b/genotype_files/genotype/BXD_Nov_23_2010_before_polish_101_102_103.geno
index 19f104d4..19f104d4 100755..100644
--- a/genotype_files/genotype/BXD_Nov_23_2010_before_polish_101_102_103.geno
+++ b/genotype_files/genotype/BXD_Nov_23_2010_before_polish_101_102_103.geno
diff --git a/genotype_files/genotype/BXD_Nov_24_2010_before_polish_55_81.geno b/genotype_files/genotype/BXD_Nov_24_2010_before_polish_55_81.geno
index ba693ea9..ba693ea9 100755..100644
--- a/genotype_files/genotype/BXD_Nov_24_2010_before_polish_55_81.geno
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diff --git a/genotype_files/genotype/BXD_mm8.geno b/genotype_files/genotype/BXD_mm8.geno
index 5a8f030e..5a8f030e 100755..100644
--- a/genotype_files/genotype/BXD_mm8.geno
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diff --git a/genotype_files/genotype/BXDforQTL b/genotype_files/genotype/BXDforQTL
index 9a025756..9a025756 100755..100644
--- a/genotype_files/genotype/BXDforQTL
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diff --git a/genotype_files/genotype/BXH.geno b/genotype_files/genotype/BXH.geno
index 16946284..16946284 100755..100644
--- a/genotype_files/genotype/BXH.geno
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diff --git a/genotype_files/genotype/BXH.geno.update b/genotype_files/genotype/BXH.geno.update
index cbe0e080..cbe0e080 100755..100644
--- a/genotype_files/genotype/BXH.geno.update
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diff --git a/genotype_files/genotype/BXH.geno.update.csv b/genotype_files/genotype/BXH.geno.update.csv
index ef7bad90..ef7bad90 100755..100644
--- a/genotype_files/genotype/BXH.geno.update.csv
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diff --git a/genotype_files/genotype/BXH.geno.update.recal b/genotype_files/genotype/BXH.geno.update.recal
index 3758c552..3758c552 100755..100644
--- a/genotype_files/genotype/BXH.geno.update.recal
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diff --git a/genotype_files/genotype/BXH.geno.update.reorder b/genotype_files/genotype/BXH.geno.update.reorder
index 2513e956..2513e956 100755..100644
--- a/genotype_files/genotype/BXH.geno.update.reorder
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diff --git a/genotype_files/genotype/BXH.map b/genotype_files/genotype/BXH.map
index 807a364f..807a364f 100755..100644
--- a/genotype_files/genotype/BXH.map
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diff --git a/genotype_files/genotype/BXH_mm8.geno b/genotype_files/genotype/BXH_mm8.geno
index 2513e956..2513e956 100755..100644
--- a/genotype_files/genotype/BXH_mm8.geno
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diff --git a/genotype_files/genotype/BXHforQTL b/genotype_files/genotype/BXHforQTL
index a6c97b80..a6c97b80 100755..100644
--- a/genotype_files/genotype/BXHforQTL
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diff --git a/genotype_files/genotype/BayXSha.geno b/genotype_files/genotype/BayXSha.geno
index 868daf3b..868daf3b 100755..100644
--- a/genotype_files/genotype/BayXSha.geno
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diff --git a/genotype_files/genotype/BayXSha.geno.update b/genotype_files/genotype/BayXSha.geno.update
index 14cb9f89..14cb9f89 100755..100644
--- a/genotype_files/genotype/BayXSha.geno.update
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diff --git a/genotype_files/genotype/BayXSha.geno.update.csv b/genotype_files/genotype/BayXSha.geno.update.csv
index 98ec26ba..98ec26ba 100755..100644
--- a/genotype_files/genotype/BayXSha.geno.update.csv
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diff --git a/genotype_files/genotype/BayXSha.geno.update.recal b/genotype_files/genotype/BayXSha.geno.update.recal
index 868daf3b..868daf3b 100755..100644
--- a/genotype_files/genotype/BayXSha.geno.update.recal
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diff --git a/genotype_files/genotype/BayXSha.geno.update.reorder b/genotype_files/genotype/BayXSha.geno.update.reorder
index 868daf3b..868daf3b 100755..100644
--- a/genotype_files/genotype/BayXSha.geno.update.reorder
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diff --git a/genotype_files/genotype/BayXSha.map b/genotype_files/genotype/BayXSha.map
index d04c2792..d04c2792 100755..100644
--- a/genotype_files/genotype/BayXSha.map
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diff --git a/genotype_files/genotype/BayXShaMB b/genotype_files/genotype/BayXShaMB
index 79e776a7..79e776a7 100755..100644
--- a/genotype_files/genotype/BayXShaMB
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diff --git a/genotype_files/genotype/BayXShaforQTL b/genotype_files/genotype/BayXShaforQTL
index bbe8dc18..bbe8dc18 100755..100644
--- a/genotype_files/genotype/BayXShaforQTL
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diff --git a/genotype_files/genotype/Brain-Normal-NIH-Gibbs.geno b/genotype_files/genotype/Brain-Normal-NIH-Gibbs.geno
index 5f56083f..5f56083f 100755..100644
--- a/genotype_files/genotype/Brain-Normal-NIH-Gibbs.geno
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diff --git a/genotype_files/genotype/C57BL-6JxC57BL-6NJF2.geno b/genotype_files/genotype/C57BL-6JxC57BL-6NJF2.geno
index 67832355..67832355 100755..100644
--- a/genotype_files/genotype/C57BL-6JxC57BL-6NJF2.geno
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diff --git a/genotype_files/genotype/CANDLE.geno b/genotype_files/genotype/CANDLE.geno
index 722c7540..722c7540 100755..100644
--- a/genotype_files/genotype/CANDLE.geno
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diff --git a/genotype_files/genotype/CEPH-2004.geno b/genotype_files/genotype/CEPH-2004.geno
index f7e46375..f7e46375 100755..100644
--- a/genotype_files/genotype/CEPH-2004.geno
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diff --git a/genotype_files/genotype/CEPH-2004.geno.20090922 b/genotype_files/genotype/CEPH-2004.geno.20090922
index c4ba7474..c4ba7474 100755..100644
--- a/genotype_files/genotype/CEPH-2004.geno.20090922
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diff --git a/genotype_files/genotype/CEPH-2009.geno b/genotype_files/genotype/CEPH-2009.geno
index 65398501..65398501 100755..100644
--- a/genotype_files/genotype/CEPH-2009.geno
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diff --git a/genotype_files/genotype/CTB6B6CTF2.geno b/genotype_files/genotype/CTB6B6CTF2.geno
index 3363c588..3363c588 100755..100644
--- a/genotype_files/genotype/CTB6B6CTF2.geno
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diff --git a/genotype_files/genotype/CTB6F2.geno b/genotype_files/genotype/CTB6F2.geno
index bf82c962..bf82c962 100755..100644
--- a/genotype_files/genotype/CTB6F2.geno
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diff --git a/genotype_files/genotype/CTB6F2_mm8.geno b/genotype_files/genotype/CTB6F2_mm8.geno
index 2033c075..2033c075 100755..100644
--- a/genotype_files/genotype/CTB6F2_mm8.geno
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diff --git a/genotype_files/genotype/CXB.geno b/genotype_files/genotype/CXB.geno
index 6c50a864..6c50a864 100755..100644
--- a/genotype_files/genotype/CXB.geno
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diff --git a/genotype_files/genotype/CXB.geno.update b/genotype_files/genotype/CXB.geno.update
index 66f7aa4d..66f7aa4d 100755..100644
--- a/genotype_files/genotype/CXB.geno.update
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diff --git a/genotype_files/genotype/CXB.geno.update.csv b/genotype_files/genotype/CXB.geno.update.csv
index c46eb6ee..c46eb6ee 100755..100644
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diff --git a/genotype_files/genotype/CXB.geno.update.recal b/genotype_files/genotype/CXB.geno.update.recal
index 185ac854..185ac854 100755..100644
--- a/genotype_files/genotype/CXB.geno.update.recal
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diff --git a/genotype_files/genotype/CXB.geno.update.reorder b/genotype_files/genotype/CXB.geno.update.reorder
index 888c01d7..888c01d7 100755..100644
--- a/genotype_files/genotype/CXB.geno.update.reorder
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diff --git a/genotype_files/genotype/CXB.map b/genotype_files/genotype/CXB.map
index d8b2ef9f..d8b2ef9f 100755..100644
--- a/genotype_files/genotype/CXB.map
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diff --git a/genotype_files/genotype/CXB_mm8.geno b/genotype_files/genotype/CXB_mm8.geno
index 4809521c..4809521c 100755..100644
--- a/genotype_files/genotype/CXB_mm8.geno
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diff --git a/genotype_files/genotype/CXBforQTL b/genotype_files/genotype/CXBforQTL
index 3647af9a..3647af9a 100755..100644
--- a/genotype_files/genotype/CXBforQTL
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diff --git a/genotype_files/genotype/ColXBur.geno b/genotype_files/genotype/ColXBur.geno
index 11be808a..11be808a 100755..100644
--- a/genotype_files/genotype/ColXBur.geno
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diff --git a/genotype_files/genotype/ColXBur.geno.update b/genotype_files/genotype/ColXBur.geno.update
index 146c58e5..146c58e5 100755..100644
--- a/genotype_files/genotype/ColXBur.geno.update
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diff --git a/genotype_files/genotype/ColXBur.geno.update.csv b/genotype_files/genotype/ColXBur.geno.update.csv
index c9e72412..c9e72412 100755..100644
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diff --git a/genotype_files/genotype/ColXBur.geno.update.recal b/genotype_files/genotype/ColXBur.geno.update.recal
index 11be808a..11be808a 100755..100644
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diff --git a/genotype_files/genotype/ColXBur.geno.update.reorder b/genotype_files/genotype/ColXBur.geno.update.reorder
index 11be808a..11be808a 100755..100644
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diff --git a/genotype_files/genotype/ColXCvi.geno b/genotype_files/genotype/ColXCvi.geno
index b0f45592..b0f45592 100755..100644
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diff --git a/genotype_files/genotype/ColXCvi.geno.update b/genotype_files/genotype/ColXCvi.geno.update
index e8e9a01e..e8e9a01e 100755..100644
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diff --git a/genotype_files/genotype/ColXCvi.geno.update.csv b/genotype_files/genotype/ColXCvi.geno.update.csv
index e71e0c92..e71e0c92 100755..100644
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diff --git a/genotype_files/genotype/ColXCvi.geno.update.recal b/genotype_files/genotype/ColXCvi.geno.update.recal
index b0f45592..b0f45592 100755..100644
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diff --git a/genotype_files/genotype/ColXCvi.geno.update.reorder b/genotype_files/genotype/ColXCvi.geno.update.reorder
index b0f45592..b0f45592 100755..100644
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diff --git a/genotype_files/genotype/ColXCvi.txt b/genotype_files/genotype/ColXCvi.txt
index 5b2f6287..5b2f6287 100755..100644
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diff --git a/genotype_files/genotype/ColxBur.txt b/genotype_files/genotype/ColxBur.txt
index 7af5d188..7af5d188 100755..100644
--- a/genotype_files/genotype/ColxBur.txt
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diff --git a/genotype_files/genotype/DGRP.geno b/genotype_files/genotype/DGRP.geno
index 10812122..10812122 100755..100644
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index 3ea8c5f7..3ea8c5f7 100755..100644
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index 05857f23..05857f23 100755..100644
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index 860d15f4..860d15f4 100755..100644
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index f4c10cb8..f4c10cb8 100755..100644
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index dc994bf3..dc994bf3 100755..100644
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index 532b57c3..532b57c3 100755..100644
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index acc32750..acc32750 100755..100644
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index eaee593b..eaee593b 100755..100644
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index 37371bd3..37371bd3 100755..100644
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index c4ba7474..c4ba7474 100755..100644
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index 07ece109..07ece109 100755..100644
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index c236cd01..c236cd01 100755..100644
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index eda7007d..eda7007d 100755..100644
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index a663d749..a663d749 100755..100644
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+++ b/genotype_files/genotype/LXS.geno.update.reorder
diff --git a/genotype_files/genotype/LXS.map b/genotype_files/genotype/LXS.map
index 83958f78..83958f78 100755..100644
--- a/genotype_files/genotype/LXS.map
+++ b/genotype_files/genotype/LXS.map
diff --git a/genotype_files/genotype/LXSMB b/genotype_files/genotype/LXSMB
index fcfcc795..fcfcc795 100755..100644
--- a/genotype_files/genotype/LXSMB
+++ b/genotype_files/genotype/LXSMB
diff --git a/genotype_files/genotype/LXS_mm8.geno b/genotype_files/genotype/LXS_mm8.geno
index a663d749..a663d749 100755..100644
--- a/genotype_files/genotype/LXS_mm8.geno
+++ b/genotype_files/genotype/LXS_mm8.geno
diff --git a/genotype_files/genotype/LXSforQTL b/genotype_files/genotype/LXSforQTL
index d4c7df5b..d4c7df5b 100755..100644
--- a/genotype_files/genotype/LXSforQTL
+++ b/genotype_files/genotype/LXSforQTL
diff --git a/genotype_files/genotype/Linsenbardt-Boehm.geno b/genotype_files/genotype/Linsenbardt-Boehm.geno
index a740a956..a740a956 100755..100644
--- a/genotype_files/genotype/Linsenbardt-Boehm.geno
+++ b/genotype_files/genotype/Linsenbardt-Boehm.geno
diff --git a/genotype_files/genotype/MDP.geno b/genotype_files/genotype/MDP.geno
index fcac015a..fcac015a 100755..100644
--- a/genotype_files/genotype/MDP.geno
+++ b/genotype_files/genotype/MDP.geno
diff --git a/genotype_files/genotype/MDP.geno.update b/genotype_files/genotype/MDP.geno.update
index b3f56835..b3f56835 100755..100644
--- a/genotype_files/genotype/MDP.geno.update
+++ b/genotype_files/genotype/MDP.geno.update
diff --git a/genotype_files/genotype/MDP.geno.update.csv b/genotype_files/genotype/MDP.geno.update.csv
index 54c5e5fa..54c5e5fa 100755..100644
--- a/genotype_files/genotype/MDP.geno.update.csv
+++ b/genotype_files/genotype/MDP.geno.update.csv
diff --git a/genotype_files/genotype/MDP.geno.update.recal b/genotype_files/genotype/MDP.geno.update.recal
index 592933d5..592933d5 100755..100644
--- a/genotype_files/genotype/MDP.geno.update.recal
+++ b/genotype_files/genotype/MDP.geno.update.recal
diff --git a/genotype_files/genotype/MDP.geno.update.reorder b/genotype_files/genotype/MDP.geno.update.reorder
index b35f43dc..b35f43dc 100755..100644
--- a/genotype_files/genotype/MDP.geno.update.reorder
+++ b/genotype_files/genotype/MDP.geno.update.reorder
diff --git a/genotype_files/genotype/MDPBK.geno b/genotype_files/genotype/MDPBK.geno
index 713777d5..713777d5 100755..100644
--- a/genotype_files/genotype/MDPBK.geno
+++ b/genotype_files/genotype/MDPBK.geno
diff --git a/genotype_files/genotype/MDP_mm8.geno b/genotype_files/genotype/MDP_mm8.geno
index a3ceaa02..a3ceaa02 100755..100644
--- a/genotype_files/genotype/MDP_mm8.geno
+++ b/genotype_files/genotype/MDP_mm8.geno
diff --git a/genotype_files/genotype/Macaca-fasicularis.geno b/genotype_files/genotype/Macaca-fasicularis.geno
index ca950770..ca950770 100755..100644
--- a/genotype_files/genotype/Macaca-fasicularis.geno
+++ b/genotype_files/genotype/Macaca-fasicularis.geno
diff --git a/genotype_files/genotype/NZBXFVB-N2.geno b/genotype_files/genotype/NZBXFVB-N2.geno
index 4401c13c..4401c13c 100755..100644
--- a/genotype_files/genotype/NZBXFVB-N2.geno
+++ b/genotype_files/genotype/NZBXFVB-N2.geno
diff --git a/genotype_files/genotype/Oregon-R_x_2b3.geno b/genotype_files/genotype/Oregon-R_x_2b3.geno
index 149966c2..149966c2 100755..100644
--- a/genotype_files/genotype/Oregon-R_x_2b3.geno
+++ b/genotype_files/genotype/Oregon-R_x_2b3.geno
diff --git a/genotype_files/genotype/QSM.geno b/genotype_files/genotype/QSM.geno
index 685ee2ff..685ee2ff 100755..100644
--- a/genotype_files/genotype/QSM.geno
+++ b/genotype_files/genotype/QSM.geno
diff --git a/genotype_files/genotype/SOTNOT-OHSU.geno b/genotype_files/genotype/SOTNOT-OHSU.geno
index 50892c8a..50892c8a 100755..100644
--- a/genotype_files/genotype/SOTNOT-OHSU.geno
+++ b/genotype_files/genotype/SOTNOT-OHSU.geno
diff --git a/genotype_files/genotype/SRxSHRSPF2.geno b/genotype_files/genotype/SRxSHRSPF2.geno
index 6ec478f8..6ec478f8 100755..100644
--- a/genotype_files/genotype/SRxSHRSPF2.geno
+++ b/genotype_files/genotype/SRxSHRSPF2.geno
diff --git a/genotype_files/genotype/SRxSHRSPF2_original.geno b/genotype_files/genotype/SRxSHRSPF2_original.geno
index 7530bb89..7530bb89 100755..100644
--- a/genotype_files/genotype/SRxSHRSPF2_original.geno
+++ b/genotype_files/genotype/SRxSHRSPF2_original.geno
diff --git a/genotype_files/genotype/SXM.geno b/genotype_files/genotype/SXM.geno
index 3d45b7a6..3d45b7a6 100755..100644
--- a/genotype_files/genotype/SXM.geno
+++ b/genotype_files/genotype/SXM.geno
diff --git a/genotype_files/genotype/SXM.geno.update b/genotype_files/genotype/SXM.geno.update
index 571325f7..571325f7 100755..100644
--- a/genotype_files/genotype/SXM.geno.update
+++ b/genotype_files/genotype/SXM.geno.update
diff --git a/genotype_files/genotype/SXM.geno.update.csv b/genotype_files/genotype/SXM.geno.update.csv
index e69de29b..e69de29b 100755..100644
--- a/genotype_files/genotype/SXM.geno.update.csv
+++ b/genotype_files/genotype/SXM.geno.update.csv
diff --git a/genotype_files/genotype/SXM.geno.update.recal b/genotype_files/genotype/SXM.geno.update.recal
index 571325f7..571325f7 100755..100644
--- a/genotype_files/genotype/SXM.geno.update.recal
+++ b/genotype_files/genotype/SXM.geno.update.recal
diff --git a/genotype_files/genotype/SXM.geno.update.reorder b/genotype_files/genotype/SXM.geno.update.reorder
index 571325f7..571325f7 100755..100644
--- a/genotype_files/genotype/SXM.geno.update.reorder
+++ b/genotype_files/genotype/SXM.geno.update.reorder
diff --git a/genotype_files/genotype/Scripps-2013.geno b/genotype_files/genotype/Scripps-2013.geno
index 7c220f92..7c220f92 100755..100644
--- a/genotype_files/genotype/Scripps-2013.geno
+++ b/genotype_files/genotype/Scripps-2013.geno
diff --git a/genotype_files/genotype/mouseChromInfo.txt b/genotype_files/genotype/mouseChromInfo.txt
index 54930e79..54930e79 100755..100644
--- a/genotype_files/genotype/mouseChromInfo.txt
+++ b/genotype_files/genotype/mouseChromInfo.txt
diff --git a/genotype_files/genotype/mouseChromInfo_mm5.txt b/genotype_files/genotype/mouseChromInfo_mm5.txt
index d6e71e0b..d6e71e0b 100755..100644
--- a/genotype_files/genotype/mouseChromInfo_mm5.txt
+++ b/genotype_files/genotype/mouseChromInfo_mm5.txt
diff --git a/genotype_files/genotype/output.geno b/genotype_files/genotype/output.geno
index 7e9aaccc..7e9aaccc 100755..100644
--- a/genotype_files/genotype/output.geno
+++ b/genotype_files/genotype/output.geno
diff --git a/genotype_files/genotype/process.py b/genotype_files/genotype/process.py
index 96cbc9b4..96cbc9b4 100755..100644
--- a/genotype_files/genotype/process.py
+++ b/genotype_files/genotype/process.py