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authorPjotr Prins2016-09-24 07:41:39 +0000
committerPjotr Prins2016-09-25 07:39:35 +0000
commite7693e53821747d294452c9bff7e8b0f38a0eb8e (patch)
treec019cd95ddf99ba1bcde1587c3d454b5b916855e /etc/default_settings.py
parentae1a7f0c8bed6b1a3445a4fac26a578851715629 (diff)
downloadgenenetwork2-e7693e53821747d294452c9bff7e8b0f38a0eb8e.tar.gz
tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2
Diffstat (limited to 'etc/default_settings.py')
-rw-r--r--etc/default_settings.py13
1 files changed, 8 insertions, 5 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py
index df734f7c..9dddd0ad 100644
--- a/etc/default_settings.py
+++ b/etc/default_settings.py
@@ -22,7 +22,7 @@ SQLALCHEMY_DATABASE_URI = 'mysql://gn2:mysql_password@localhost/db_webqtl_s'
SQLALCHEMY_POOL_RECYCLE = 3600
GN_SERVER_URL = "http://localhost:8880/"
-# Flask configuration (see website)
+# ---- Flask configuration (see website)
TRAP_BAD_REQUEST_ERRORS = True
SECURITY_CONFIRMABLE = True
SECURITY_TRACKABLE = True
@@ -34,8 +34,8 @@ SECURITY_POST_LOGIN_VIEW = "/thank_you"
SERVER_PORT = 5003
SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc'
-# Behavioural settings (defaults) note that logger and log levels can
-# be overridden at the module level and with enviroment settings
+# ---- Behavioural settings (defaults) note that logger and log levels can
+# be overridden at the module level and with enviroment settings
WEBSERVER_MODE = 'DEV' # Python webserver mode (DEBUG|DEV|PROD)
WEBSERVER_BRANDING = None # Set the branding (nyi)
WEBSERVER_DEPLOY = None # Deployment specifics (nyi)
@@ -49,10 +49,13 @@ LOG_BENCH = True # Log bench marks
USE_REDIS = True # REDIS caching (note that redis will be phased out)
USE_GN_SERVER = 'False' # Use GN_SERVER SQL calls
-# Path overrides for Genenetwork
+# ---- Path overrides for Genenetwork
+# TMPDIR is normally picked up from the environment
HOME=os.environ['HOME']
LOGFILE = HOME+"/genenetwork2.log"
-GENENETWORK_FILES = HOME+"/gn2_data"
+GENENETWORK_FILES = HOME+"/gn2_data" # base dir for all static data files
+
+# ---- GN2 Executables
PYLMM_COMMAND = str.strip(os.popen("which pylmm_redis").read())
PLINK_COMMAND = str.strip(os.popen("which plink2").read())
GEMMA_COMMAND = str.strip(os.popen("which gemma").read())