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| author | Pjotr Prins | 2016-06-08 10:04:45 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2016-06-08 10:04:45 +0000 |
| commit | b88843ee70fa2976674c9b2b5721af18f570978d (patch) | |
| tree | 6f219b11fffacff3cc1e917bd8b7119c8da3dd1f /doc | |
| parent | 7e210c2b8a3f0e4525dcfafcdca4e95ef7a33690 (diff) | |
| download | genenetwork2-b88843ee70fa2976674c9b2b5721af18f570978d.tar.gz | |
Docs: updated installation recipe
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/README.org | 13 |
1 files changed, 11 insertions, 2 deletions
diff --git a/doc/README.org b/doc/README.org index 36b7d8f2..952f406f 100644 --- a/doc/README.org +++ b/doc/README.org @@ -42,7 +42,7 @@ install of Debian 8.3.0 (in KVM) though it should work on any modern Linux distribution (including CentOS). For more elaborate installation instructions see [[#source-deployment][Source deployment]]. -Note that GN2 consists of an approx. 4GB installation including +Note that GN2 consists of an approx. 5 GB installation including database. ** Step 1: Install GNU Guix @@ -169,7 +169,16 @@ which can be fixed with using the --fallback switch, or install and restart the genenetwork2 install. -After installation you should be able to run genenetwork2. +After installation you should be able to run genenetwork2 after updating +the Guix suggested environment vars. Check the ouput of + +#+begin_src bash +guix package --search-paths +export PYTHONPATH="/root/.guix-profile/lib/python2.7/site-packages" +export R_LIBS_SITE="/root/.guix-profile/site-library/" +#+end_src + +and copy-paste the exports into the terminal befor running: #+begin_src bash genenetwork2 |