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authorPjotr Prins2016-07-16 12:00:55 +0600
committerPjotr Prins2016-07-16 12:00:55 +0600
commit0e975e62810c1b8afac13e1fa039a3998fc58ba9 (patch)
treeb458def86056d281957c923118996968e82e0b10 /doc
parentfb6fcc3cd296b4b626650565119acbdd0188dc2d (diff)
downloadgenenetwork2-0e975e62810c1b8afac13e1fa039a3998fc58ba9.tar.gz
README: added info
Diffstat (limited to 'doc')
-rw-r--r--doc/Architecture.org5
1 files changed, 3 insertions, 2 deletions
diff --git a/doc/Architecture.org b/doc/Architecture.org
index 9a561568..cac40939 100644
--- a/doc/Architecture.org
+++ b/doc/Architecture.org
@@ -56,7 +56,6 @@ from the database. To get the menu data in YAML you can do something like
see [[https://github.com/genenetwork/gn_server/doc/API.md][GnServer REST API]] documentation.
* Database
-
** Phenotypes
Phenotypes are stored in the SQL database. For what happens at the
@@ -67,7 +66,7 @@ see the installation [[./README.org][instructions]].
Genotypes are stored in genotype files. These are part of the GNU Guix
distribution, see the installation [[./README.org][instructions]]. Genotype files are
-currently in GN1 format, and will be aligned with the R/qtl2 format. Now it is
+currently in GN1 format, and will be aligned with the [[http://kbroman.org/qtl2/pages/sampledata.html][R/qtl2 formats]]. Now it is
for BXD.geno:
#+begin_src js
@@ -93,3 +92,5 @@ B B B B B B D B D B B D B B H H B D B B H H B B D D D D D B B H B B B B D B D B
D D D D D H B D D B D B B D D B D D B B B B B B U D
etc
#+end_src
+
+and, for example, in the method run_rqtl_geno this file gets loaded.