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| author | Pjotr Prins | 2016-07-16 12:00:55 +0600 |
|---|---|---|
| committer | Pjotr Prins | 2016-07-16 12:00:55 +0600 |
| commit | 0e975e62810c1b8afac13e1fa039a3998fc58ba9 (patch) | |
| tree | b458def86056d281957c923118996968e82e0b10 /doc | |
| parent | fb6fcc3cd296b4b626650565119acbdd0188dc2d (diff) | |
| download | genenetwork2-0e975e62810c1b8afac13e1fa039a3998fc58ba9.tar.gz | |
README: added info
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/Architecture.org | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/doc/Architecture.org b/doc/Architecture.org index 9a561568..cac40939 100644 --- a/doc/Architecture.org +++ b/doc/Architecture.org @@ -56,7 +56,6 @@ from the database. To get the menu data in YAML you can do something like see [[https://github.com/genenetwork/gn_server/doc/API.md][GnServer REST API]] documentation. * Database - ** Phenotypes Phenotypes are stored in the SQL database. For what happens at the @@ -67,7 +66,7 @@ see the installation [[./README.org][instructions]]. Genotypes are stored in genotype files. These are part of the GNU Guix distribution, see the installation [[./README.org][instructions]]. Genotype files are -currently in GN1 format, and will be aligned with the R/qtl2 format. Now it is +currently in GN1 format, and will be aligned with the [[http://kbroman.org/qtl2/pages/sampledata.html][R/qtl2 formats]]. Now it is for BXD.geno: #+begin_src js @@ -93,3 +92,5 @@ B B B B B B D B D B B D B B H H B D B B H H B B D D D D D B B H B B B B D B D B D D D D D H B D D B D B B D D B D D B B B B B B U D etc #+end_src + +and, for example, in the method run_rqtl_geno this file gets loaded. |