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| author | zsloan | 2021-10-18 17:50:26 +0000 |
|---|---|---|
| committer | zsloan | 2021-10-18 17:50:26 +0000 |
| commit | e36eaf0003a598bc5aa688803dd1b36c24a4c051 (patch) | |
| tree | a59b7dadf02241575eb0774f97c6048e2425c053 /doc/guix_profile_setup.org | |
| parent | bd421438f1f0b4de913fa40cd49cfcda27e6b16f (diff) | |
| parent | 04f3d13aceeaec2e52b94037d59f08ed6dc6a8bb (diff) | |
| download | genenetwork2-e36eaf0003a598bc5aa688803dd1b36c24a4c051.tar.gz | |
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into feature/remove_trait_creation_from_search
Diffstat (limited to 'doc/guix_profile_setup.org')
| -rw-r--r-- | doc/guix_profile_setup.org | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/doc/guix_profile_setup.org b/doc/guix_profile_setup.org new file mode 100644 index 00000000..c397377c --- /dev/null +++ b/doc/guix_profile_setup.org @@ -0,0 +1,39 @@ +* Setting up GUIX profile for GN + +First create a guix profile with the latest packages: + +: ~/opt/guix/bin/guix pull + +This will create a profile with the latest packages under`~/.config/guix/current` + +Now you have the latest guix. Check: `$HOME/.config/guix/current/bin/guix --version` + +At this point, it's worth mentioning that installing +python3-genenetwork using `$HOME/.config/guix/current/bin/guix` should +work; but let's use the dev version(since that may come handy in +time), and it's a nice thing to know. + +Next, we ensure that the appropriate GUILE<sub>PATHS</sub> are set: + +: export GUILE_LOAD_PATH=$HOME/.config/guix/current/share/guile/site/3.0/ +: export GUILE_LOAD_COMPILED_PATH=$HOME/.config/guix/current/lib/guile/3.0/site-ccache/ + +Get into the container: + +: $HOME/.config/guix/current/bin/guix environment -C guix --ad-hoc bash gcc-toolchain +: ./bootstrap +: ./configure --localstatedir=/var --sysconfdir=/etc + +Check that everything works: + +: make check + +Clean up and build: + +: make clean-go +: make -j 4 +: exit + +Install Python3 (substitute paths when necessary): + +: env GUIX_PACKAGE_PATH='/home/zas1024/guix-bioinformatics:/home/zas1024/guix-past/modules' $HOME/.config/guix/current/bin/guix install python3-genenetwork2 -p ~/opt/python3-genenetwork2 --substitute-urls="http://guix.genenetwork.org https://berlin.guixsd.org https://ci.guix.gnu.org https://mirror.hydra.gnu.org" |