diff options
| author | Arthur Centeno | 2021-06-15 15:33:59 +0000 |
|---|---|---|
| committer | Arthur Centeno | 2021-06-15 15:33:59 +0000 |
| commit | c1a6ca69f7c48d99b6c5d62e56a445583fd4c08b (patch) | |
| tree | f98fccc44829e3f52e585d6b41a1942aa52bd8b7 /doc/docker-container.org | |
| parent | 7e49c006af9c4f7453c3578a7d4f1fc4d7bdf3ed (diff) | |
| parent | 9e9e0e4d440383f617542e810a1115833eafd7bf (diff) | |
| download | genenetwork2-c1a6ca69f7c48d99b6c5d62e56a445583fd4c08b.tar.gz | |
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into acenteno
Diffstat (limited to 'doc/docker-container.org')
| -rw-r--r-- | doc/docker-container.org | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/doc/docker-container.org b/doc/docker-container.org index ec91824a..ef0d71fc 100644 --- a/doc/docker-container.org +++ b/doc/docker-container.org @@ -32,13 +32,13 @@ First create the gn2 tar archive by running: env GUIX_PACKAGE_PATH="/home/bonface/projects/guix-bioinformatics:/home/bonface/projects/guix-past/modules" \ ./pre-inst-env guix pack --no-grafts\ -S /gn2-profile=/ \ - screen genenetwork2 + screen python2-genenetwork2 # For the Python 3 version: env GUIX_PACKAGE_PATH="/home/bonface/projects/guix-bioinformatics:/home/bonface/projects/guix-past/modules" \ ./pre-inst-env guix pack --no-grafts\ -S /gn2-profile=/ \ - screen python3-genenetwork2 + screen genenetwork2 #+end_src The output will look something similar to: @@ -59,16 +59,16 @@ RUN tar -xzf /tmp/gn2.tar.gz -C / && rm -f /tmp/gn2.tar.gz && \ Build the image(Note the fullstop at the end): -: sudo docker build -t python2-genenetwork2:latest -f Dockerfile . +: sudo docker build -t genenetwork2:latest -f Dockerfile . To load the image interactively you've just created: -: docker run -ti "python2-genenetwork2:latest" bash +: docker run -ti "genenetwork2:latest" bash Assuming you have a docker instance running, you could always run commands in it e.g: -: docker run "python2-genenetwork2:latest" python --version +: docker run "genenetwork2:latest" python --version * Pushing to DockerHub @@ -78,7 +78,7 @@ CI environment using Github Actions. To push to dockerhub, first get the image name by running =docker images=. Push to dockerhub using a command similar to: -: docker push bonfacekilz/python2-genenetwork2:latest +: docker push bonfacekilz/genenetwork2:latest Right now, we have 2 images on DockerHub: |