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authorzsloan2016-05-17 16:03:05 +0000
committerzsloan2016-05-17 16:03:05 +0000
commit0d590051ce073a169295382e5adac34cc803e5ac (patch)
tree76bea6f1f69288a498e9f13d20b638b942ab0a0c /doc/GUIX-Reproducible-from-source.org
parentf6cee1731772c3482b0afd4c77472d69e747c655 (diff)
parent04afa563e6d53fe2a91ac2e6eb4af2f2fa5d5c3b (diff)
downloadgenenetwork2-0d590051ce073a169295382e5adac34cc803e5ac.tar.gz
Merge branch 'staging' of github.com:genenetwork/genenetwork2
Diffstat (limited to 'doc/GUIX-Reproducible-from-source.org')
-rw-r--r--doc/GUIX-Reproducible-from-source.org21
1 files changed, 20 insertions, 1 deletions
diff --git a/doc/GUIX-Reproducible-from-source.org b/doc/GUIX-Reproducible-from-source.org
index b88eb9e8..4399ea26 100644
--- a/doc/GUIX-Reproducible-from-source.org
+++ b/doc/GUIX-Reproducible-from-source.org
@@ -4,6 +4,7 @@
- [[#introduction][Introduction]]
- [[#binary-deployment][Binary deployment]]
- [[#from-source-deployment][From source deployment]]
+ - [[#create-archive][Create archive]]
* Introduction
@@ -31,5 +32,23 @@ Next build guix (and run) following the instructions in [[https://github.com/pjo
Once that is done we can add the guix-bioinformatics path with
-: env GUIX_PACKAGE_PATH=../guix-bioinformatics ./pre-inst-env guix package -A slurm
+: env GUIX_PACKAGE_PATH=../guix-bioinformatics command
+So
+
+#+begin_src sh :lang bash
+#+begin_src sh :lang bash
+gn-stable-guix$ env GUIX_PACKAGE_PATH=../guix-bioinformatics ./pre-inst-env guix package -A genenetwork
+genenetwork1 1.0-d622c803b out ../guix-bioinformatics/gn/packages/bioinformatics.scm:163:2
+genenetwork2 2.0-9e9475053 out ../guix-bioinformatics/gn/packages/bioinformatics.scm:215:2
+#+end_src sh :lang bash
+
+Install with
+
+#+begin_src sh :lang bash
+gn-stable-guix$ env GUIX_PACKAGE_PATH=../guix-bioinformatics ./pre-inst-env guix package -i genenetwork2
+#+end_src sh :lang bash
+
+* Create archive
+
+: env GUIX_PACKAGE_PATH=../../genenetwork/guix-bioinformatics/ ./pre-inst-env guix archive --export -r genenetwork2 > guix_gn2-2.0-9e9475053.nar