diff options
| author | BonfaceKilz | 2020-10-27 01:18:38 +0300 |
|---|---|---|
| committer | GitHub | 2020-10-27 01:18:38 +0300 |
| commit | 37c391bc62e9080effcf83c6ff0056ab8841b7fb (patch) | |
| tree | 1e794c5616c25e82869314a2f4e91f64c4d40ea9 /bin | |
| parent | 85896707ef1f9e214b45298f6b5b1a9dc37bc839 (diff) | |
| parent | b369489e6c075eee3f58bb33e493c901b052b0a1 (diff) | |
| download | genenetwork2-37c391bc62e9080effcf83c6ff0056ab8841b7fb.tar.gz | |
Merge pull request #422 from BonfaceKilz/build/python3-migration
Build/python3 migration
Diffstat (limited to 'bin')
| -rwxr-xr-x | bin/genenetwork2 | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index dd6db7d6..5f4e0f9a 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -60,7 +60,7 @@ GN2_ID=$(cat /etc/hostname):$(basename $GN2_BASE_DIR) echo GN2_BASE_DIR=$GN2_BASE_DIR -GUIX_SITE=$GN2_BASE_DIR/lib/python2.7/site-packages +GUIX_SITE=$GN2_BASE_DIR/lib/python3.8/site-packages if [ -d $GUIX_SITE ]; then echo INFO: GN2 is running from GNU Guix GN2_BASE_DIR=$GUIX_SITE @@ -105,7 +105,7 @@ echo GN2_SETTINGS=$settings # if [ -z $ELASTICSEARCH_PROFILE ]; then # echo -e "WARNING: Elastic Search profile has not been set - use ELASTICSEARCH_PROFILE"; # else -# PYTHONPATH="$PYTHONPATH${PYTHONPATH:+:}$ELASTICSEARCH_PROFILE/lib/python2.7/site-packages" +# PYTHONPATH="$PYTHONPATH${PYTHONPATH:+:}$ELASTICSEARCH_PROFILE/lib/python3.8/site-packages" # fi if [ -z $GN2_PROFILE ] ; then @@ -121,7 +121,7 @@ if [ -z $GN2_PROFILE ]; then read -p "PRESS [ENTER] TO CONTINUE..." else export PATH=$GN2_PROFILE/bin:$PATH - export PYTHONPATH="$PYTHON_GN_PATH:$GN2_PROFILE/lib/python2.7/site-packages" # never inject another PYTHONPATH!! + export PYTHONPATH="$GN2_PROFILE/lib/python3.8/site-packages" # never inject another PYTHONPATH!! export R_LIBS_SITE=$GN2_PROFILE/site-library export JS_GUIX_PATH=$GN2_PROFILE/share/genenetwork2/javascript export GUIX_GTK3_PATH="$GN2_PROFILE/lib/gtk-3.0" |