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authorzsloan2018-04-12 10:35:57 -0500
committerGitHub2018-04-12 10:35:57 -0500
commit270f86c41f7c90cc4ca51bca0aec789a09a36a0e (patch)
tree4febf38054bf852ebd08af7d2746722517de4e36 /bin
parent1559a2f3f6a1a0c8ddf3f87fb3112944f8fa1760 (diff)
parent518be96a310963a4127a0b569a73c91187c02b64 (diff)
downloadgenenetwork2-270f86c41f7c90cc4ca51bca0aec789a09a36a0e.tar.gz
Merge pull request #315 from pjotrp/testing
README and docs
Diffstat (limited to 'bin')
-rwxr-xr-xbin/genenetwork215
1 files changed, 8 insertions, 7 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2
index 18e02388..b3a8d8c2 100755
--- a/bin/genenetwork2
+++ b/bin/genenetwork2
@@ -15,28 +15,29 @@
# installation path of genenetwork). Say your profile is in
# ~/opt/gn-latest-guix
#
-# env GN2_PROFILE=~/opt/gn-latest-guix ./bin/genenetwork2
+# env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2
#
# You can pass in your own settings file, e.g.
#
-# env GN2_PROFILE=~/opt/gn-latest-guix ./bin/genenetwork2 ~/my_settings.py
+# env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2 ~/my_settings.py
#
# To run a maintenance python script with settings (instead of the
-# webserver) add that with a -c switch, e.g.
+# webserver) run from the base-dir with settings file and add that
+# script with a -c switch, e.g.
#
-# env GN2_PROFILE=~/opt/gn-latest-guix ./bin/genenetwork2 -c ./wqflask/maintenance/gen_select_dataset.py
+# env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2 ./etc/default_settings.py -c ./maintenance/gen_select_dataset.py
#
# To run any script in the environment
#
-# env GN2_PROFILE=~/opt/gn-latest-guix ./bin/genenetwork2 ./etc/default_settings.py -cli echo "HELLO WORLD"
+# env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2 ./etc/default_settings.py -cli echo "HELLO WORLD"
#
# To get a python REPL(!)
#
-# env GN2_PROFILE=~/opt/gn-latest-guix ./bin/genenetwork2 ./etc/default_settings.py -cli python
+# env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2 ./etc/default_settings.py -cli python
#
# For development you may want to run
#
-# env GN2_PROFILE=~/opt/gn-latest-guix WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG ./bin/genenetwork2
+# env GN2_PROFILE=~/opt/gn-latest WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG ./bin/genenetwork2
#
# For staging and production we use gunicorn. Run with something like
# (note you have to provide the server port). Provide a settings file!