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| author | Frederick Muriuki Muriithi | 2021-12-10 09:52:38 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-01-28 08:07:26 +0300 |
| commit | a771de4f99b7e0e4fb0b70ffd39817bc94bdf7b3 (patch) | |
| tree | 42274b50afd80c630ef3470100d3420238da569e /bin | |
| parent | bdf3de41c7c7202e37cf1bd762ede04333c222c8 (diff) | |
| download | genenetwork2-a771de4f99b7e0e4fb0b70ffd39817bc94bdf7b3.tar.gz | |
Automate setting of the development GN3 repo
* When developing the GN2 code, there are times we need to use the
latest code in GN3, and rather than manually editing the
`bin/genenetwork` file every time we need that, this commit enables
the use of an environment variable.
In this case, launching the application with something like:
$ env GN3_DEV_REPO_PATH="$HOME/genenetwork3" ...\
./bin/genenetwork2 ./the_settings.py -gunicorn-dev
will add the path to the development version to the PYTHONPATH. If
the GN3_DEV_REPO_PATH variable is not set, then the PYTHONPATH is
not altered, and would be as if there is no development version of
GN3 in use.
Diffstat (limited to 'bin')
| -rwxr-xr-x | bin/genenetwork2 | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index 024f34d2..e6eb56a6 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -100,6 +100,8 @@ if [ -z $GEMMA_WRAPPER_COMMAND ]; then export GEMMA_WRAPPER_COMMAND="$GN2_PROFILE/bin/gemma-wrapper" fi +export PYTHONPATH="${GN3_DEV_REPO_PATH:+$GN3_DEV_REPO_PATH:}:${PYTHONPATH}" + # Our UNIX TMPDIR defaults to /tmp - change this on a shared server if [ -z $TMPDIR ]; then TMPDIR="/tmp" |